variant-analysis

Tutorials covering variant-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Automating Galaxy workflows using the command line
workflows variant-analysis covid19

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Variant analysis
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Calling variants in diploid systems
Calling variants in non-diploid systems
prokaryote microgalaxy
Calling very rare variants
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
Exome sequencing data analysis for diagnosing a genetic disease
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Identification of somatic and germline variants from tumor and normal sample pairs
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mapping and molecular identification of phenotype-causing mutations
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)
Somatic Variant Discovery from WES Data Using Control-FREEC
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Contributors

This material was contributed to by:

Thoba Lose avatar Thoba LoseMarius van den Beek avatar Marius van den BeekNick Stoler avatar Nick Stolerorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoSimon Gladman avatar Simon Gladmanorcid logoAnna Syme avatar Anna SymeTorsten Seemann avatar Torsten SeemannAnton Nekrutenko avatar Anton NekrutenkoEkaterina Polkh avatar Ekaterina Polkhorcid logoArmin Dadras avatar Armin Dadrasorcid logoNicola Soranzo avatar Nicola SoranzoJasper Ouwerkerk avatar Jasper OuwerkerkTorsten Houwaart avatar Torsten Houwaartorcid logoAlex Ostrovsky avatar Alex OstrovskyVerena Moosmann avatar Verena Moosmannorcid logoTomas Klingström avatar Tomas Klingströmorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon BrayMélanie Petera avatar Mélanie Peteraorcid logoHelena Rasche avatar Helena Rascheorcid logoJörg Wennmann avatar Jörg Wennmannorcid logoDave Clements avatar Dave Clementsorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa MüllerNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn Grüningorcid logoMartin Čech avatar Martin Čechorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaria Doyle avatar Maria Doyleorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoLinelle Abueg avatar Linelle AbuegDavid Salgado avatar David SalgadoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
ELIXIR Europe
Logo
UFR
Logo
BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
Logo
Australian BioCommons
Logo
ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
Logo
DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
Logo
de.NBI
Logo
Melbourne Bioinformatics
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
The University of Melbourne