variant-analysis

Tutorials covering variant-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Automating Galaxy workflows using the command line
workflows variant-analysis covid19

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Variant analysis
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Calling variants in diploid systems
Calling variants in non-diploid systems
prokaryote microgalaxy
Calling very rare variants
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
Exome sequencing data analysis for diagnosing a genetic disease
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Identification of somatic and germline variants from tumor and normal sample pairs
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mapping and molecular identification of phenotype-causing mutations
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)
Somatic Variant Discovery from WES Data Using Control-FREEC
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Contributors

This material was contributed to by:

Torsten Seemann avatar Torsten Seemannorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoArmin Dadras avatar Armin DadrasTorsten Houwaart avatar Torsten Houwaartorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoLinelle Abueg avatar Linelle AbuegAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDave Clements avatar Dave Clementsorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoHelena Rasche avatar Helena Rascheorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoSaskia Hiltemann avatar Saskia HiltemannMarius van den Beek avatar Marius van den Beekorcid logoTeresa Müller avatar Teresa Müllerorcid logoDaniel Blankenberg avatar Daniel BlankenbergSimon Bray avatar Simon Brayorcid logoBérénice Batut avatar Bérénice Batutorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTomas Klingström avatar Tomas Klingströmorcid logoMartin Čech avatar Martin Čechorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-JacksonNiall Beard avatar Niall BeardEkaterina Polkh avatar Ekaterina Polkhorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika ErxlebenThoba Lose avatar Thoba Loseorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoDavid Salgado avatar David Salgadoorcid logoKatarzyna Kamieniecka avatar Katarzyna KamienieckaMélanie Petera avatar Mélanie Peteraorcid logoSimon Gladman avatar Simon Gladmanorcid logoMaria Doyle avatar Maria DoyleGildas Le Corguillé avatar Gildas Le CorguilléJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoPeter van Heusden avatar Peter van HeusdenVerena Moosmann avatar Verena Moosmannorcid logoAnna Syme avatar Anna Symeorcid logoTristan Reynolds avatar Tristan ReynoldsNick Stoler avatar Nick Stolerorcid logoJörg Wennmann avatar Jörg Wennmann

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Melbourne Bioinformatics
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ELIXIR Europe
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UFR
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Australian BioCommons
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DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
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de.NBI
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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The University of Melbourne