variant-analysis

Tutorials covering variant-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Automating Galaxy workflows using the command line
workflows variant-analysis covid19

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Variant analysis
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Calling variants in diploid systems
Calling variants in non-diploid systems
prokaryote microgalaxy
Calling very rare variants
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
Exome sequencing data analysis for diagnosing a genetic disease
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Identification of somatic and germline variants from tumor and normal sample pairs
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mapping and molecular identification of phenotype-causing mutations
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)
Somatic Variant Discovery from WES Data Using Control-FREEC
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Contributors

This material was contributed to by:

orcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoJörg Wennmann avatar Jörg Wennmannorcid logoAnna Syme avatar Anna Symeorcid logoPeter van Heusden avatar Peter van HeusdenGildas Le Corguillé avatar Gildas Le Corguilléorcid logoYvan Le Bras avatar Yvan Le BrasVerena Moosmann avatar Verena MoosmannMarius van den Beek avatar Marius van den BeekSimon Bray avatar Simon Brayorcid logoMartin Čech avatar Martin Čechorcid logoMaria Doyle avatar Maria Doyleorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-JacksonTorsten Houwaart avatar Torsten Houwaartorcid logoBérénice Batut avatar Bérénice BatutAnton Nekrutenko avatar Anton Nekrutenkoorcid logoArmin Dadras avatar Armin DadrasJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoDave Clements avatar Dave ClementsNick Stoler avatar Nick Stolerorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTeresa Müller avatar Teresa Müllerorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal GallardoEkaterina Polkh avatar Ekaterina Polkhorcid logoBjörn Grüning avatar Björn Grüningorcid logoSimon Gladman avatar Simon Gladmanorcid logoLinelle Abueg avatar Linelle AbuegTorsten Seemann avatar Torsten Seemannorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKhaled Jum'ah avatar Khaled Jum'ahMélanie Petera avatar Mélanie Peteraorcid logoTomas Klingström avatar Tomas KlingströmThoba Lose avatar Thoba Loseorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoSaskia Hiltemann avatar Saskia HiltemannNiall Beard avatar Niall Beardorcid logoDaniel Blankenberg avatar Daniel BlankenbergDavid Salgado avatar David Salgadoorcid logoAnika Erxleben avatar Anika Erxleben

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ELIXIR Europe
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ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
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The University of Melbourne
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Melbourne Bioinformatics
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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Australian BioCommons
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DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.