variant-analysis

Tutorials covering variant-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
Automating Galaxy workflows using the command line
workflows variant-analysis covid19

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Variant analysis
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Calling variants in diploid systems
Calling variants in non-diploid systems
prokaryote microgalaxy
Calling very rare variants
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates
Exome sequencing data analysis for diagnosing a genetic disease
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Identification of somatic and germline variants from tumor and normal sample pairs
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mapping and molecular identification of phenotype-causing mutations
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)
Somatic Variant Discovery from WES Data Using Control-FREEC
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Contributors

This material was contributed to by:

orcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoDaniel Blankenberg avatar Daniel BlankenbergTorsten Seemann avatar Torsten Seemannorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDave Clements avatar Dave ClementsEkaterina Polkh avatar Ekaterina Polkhorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoSimon Gladman avatar Simon GladmanMarius van den Beek avatar Marius van den Beekorcid logoArmin Dadras avatar Armin DadrasMélanie Petera avatar Mélanie PeteraVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria Doyleorcid logoHelena Rasche avatar Helena RascheJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoNicola Soranzo avatar Nicola SoranzoNiall Beard avatar Niall Beardorcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoAnna Syme avatar Anna Symeorcid logoCristóbal Gallardo avatar Cristóbal GallardoThoba Lose avatar Thoba Loseorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoMartin Čech avatar Martin ČechGildas Le Corguillé avatar Gildas Le CorguilléAnton Nekrutenko avatar Anton Nekrutenkoorcid logoJörg Wennmann avatar Jörg WennmannSimon Bray avatar Simon BrayNick Stoler avatar Nick Stolerorcid logoTeresa Müller avatar Teresa Müllerorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoTomas Klingström avatar Tomas KlingströmTorsten Houwaart avatar Torsten HouwaartDavid Salgado avatar David Salgadoorcid logoBérénice Batut avatar Bérénice Batutorcid logoLinelle Abueg avatar Linelle Abueg

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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Australian BioCommons
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
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DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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The University of Melbourne
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Melbourne Bioinformatics
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UFR
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ELIXIR Europe