prokaryote
Tutorials covering prokaryote
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Making sense of a newly assembled genome | |||||
| Unicycler Assembly |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Genome annotation with Prokka | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Comparative gene analysis in unannotated genomes |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Peter van Heusden
Galo A. Goig
Simon Bray
Maria Doyle
Esteban Perez-Wohlfeil
Enis Afgan
Delphine Lariviere
Torsten Seemann
Bérénice Batut
William Durand
Anika Erxleben
Linelle Abueg
Gildas Le Corguillé
Cristóbal Gallardo
Stéphanie Robin
Anthony Bretaudeau
Björn Grüning
Jennifer Hillman-Jackson
Simon Gladman
Wolfgang Maier
Thoba Lose
Daniela Brites
Christoph Stritt
Anna Syme
Alex Ostrovsky
Nathan Dunn
Nicola Soranzo
Anton Nekrutenko
Mélanie Petera
Helena Rasche
Niall Beard
Mateo Boudet
Tristan Reynolds
Lucille Delisle
Saskia Hiltemann
Ekaterina Polkh
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
Melbourne Bioinformatics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons