prokaryote
Tutorials covering prokaryote
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Making sense of a newly assembled genome | |||||
| Unicycler Assembly |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Genome annotation with Prokka | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Comparative gene analysis in unannotated genomes |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Maria Doyle
Daniela Brites
Anna Syme
Nicola Soranzo
Linelle Abueg
Stéphanie Robin
Helena Rasche
Lucille Delisle
Enis Afgan
Anthony Bretaudeau
Anika Erxleben
Mateo Boudet
Esteban Perez-Wohlfeil
Anton Nekrutenko
Simon Gladman
Thoba Lose
Cristóbal Gallardo
Torsten Seemann
Gildas Le Corguillé
Christoph Stritt
Ekaterina Polkh
Jennifer Hillman-Jackson
Wolfgang Maier
Nathan Dunn
Peter van Heusden
Delphine Lariviere
Alex Ostrovsky
Niall Beard
Bérénice Batut
Björn Grüning
William Durand
Simon Bray
Mélanie Petera
Saskia Hiltemann
Tristan Reynolds
Galo A. Goig
Funding
These individuals or organisations provided funding support for the development of this resource
ELIXIR Europe
The University of Melbourne
Australian BioCommons
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics