prokaryote
Tutorials covering prokaryote
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Making sense of a newly assembled genome | |||||
| Unicycler Assembly |
Evolution
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identifying tuberculosis transmission links: from SNPs to transmission clusters | |||||
| Tree thinking for tuberculosis evolution and epidemiology |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Genome annotation with Prokka | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Comparative gene analysis in unannotated genomes |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Calling variants in non-diploid systems | |||||
| M. tuberculosis Variant Analysis | |||||
| Microbial Variant Calling |
Contributors
This material was contributed to by:
Alex Ostrovsky
Ekaterina Polkh
Esteban Perez-Wohlfeil
Cristóbal Gallardo
Tristan Reynolds
Simon Bray
Galo A. Goig
Wolfgang Maier
Delphine Lariviere
Peter van Heusden
Gildas Le Corguillé
Thoba Lose
Simon Gladman
Christoph Stritt
Maria Doyle
Anton Nekrutenko
Stéphanie Robin
Anna Syme
William Durand
Anika Erxleben
Torsten Seemann
Mateo Boudet
Anthony Bretaudeau
Saskia Hiltemann
Nicola Soranzo
Bérénice Batut
Daniela Brites
Lucille Delisle
Niall Beard
Mélanie Petera
Nathan Dunn
Helena Rasche
Linelle Abueg
Björn Grüning
Jennifer Hillman-Jackson
Enis Afgan
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ELIXIR Europe
Australian BioCommons
Melbourne Bioinformatics