Galaxy Server administration
Here you can learn everything you need to become a Pro Galaxy Administrator! These resources cover everything from setup, to configuration, to monitoring, to customisation.
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Core
These are the core, foundational topics for the majority of administration in Galaxy.
Lesson | Slides | Hands-on | Recordings |
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Ansible | |||
Galaxy Installation with Ansible | |||
Galaxy from an administrator's point of view
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Jobs & Scheduling
Learn how to use DRMAA and other resources to schedule your jobs on clusters
Data Management & Reference Data
Manage data like a pro: tips on scaling to 1PB and more.
Further Learning
These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.
Running Galaxy on the Cloud
If acronyms like EKS, EC2, GCP, ECS, K8S mean anything to you, then you've found where your home! Run Galaxy on someone else's computer with Cloud based tutorials
Maintaining a Production Galaxy
Deployed Galaxy? Now what? All of the knowledge you need to maintain it long term.
Monitoring
Monitor Galaxy like UseGalaxy.eu, learn the ins and outs of monitoring
Lesson | Slides | Hands-on | Recordings |
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Galaxy Monitoring
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Galaxy Monitoring with Reports | |||
Galaxy Monitoring with Telegraf and Grafana | |||
Galaxy Monitoring with gxadmin | |||
Monitoring Galaxy and Pulsar with Sentry |
Deprecated Tutorials
Please do not run these. They are outdated and for historical, archival purposes only.
Lesson | Slides | Hands-on | Recordings |
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Advanced customisation of a Galaxy instance
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Controlling Galaxy with systemd or Supervisor
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uWSGI
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Other
Assorted Tutorials
Lesson | Slides | Hands-on | Recordings |
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Create a subdomain for your community on UseGalaxy.eu | |||
Docker and Galaxy
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Empathy
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Galactic Database
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Galaxy Database schema
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Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche Nate Coraor Simon Gladman Björn Grüning Martin ČechContributors
This material was contributed to by:
Vlad Visan John Davis Nicola Soranzo Alex Mahmoud Matthias Bernt Eli Chadwick John Chilton Nuwan Goonasekera Mehmet Tekman Dave B. Mélanie Petera Kweyakie Afi Blebo Tunc Kayikcioglu Tomas Klingström Marius van den Beek Abdulrahman Azab Yvan Le Bras Catherine Bromhead Lucille Delisle Enis Afgan Nate Coraor Torfinn Nome Maria Doyle Edwin den Haas Mira Kuntz Simon Gladman Martin Čech Hans-Rudolf Hotz Anne Fouilloux José Manuel Domínguez Wolfgang Maier Niall Beard Bérénice Batut William Durand Pablo Moreno Laila Los Gildas Le Corguillé Cristóbal Gallardo Helena Rasche Björn Grüning Gianmauro Cuccuru Anthony Bretaudeau Marie Josse Peter van Heusden Valentin Marcon Daniel Blankenberg Saskia HiltemannFunding
These individuals or organisations provided funding support for the development of this resource