Galaxy Server administration

Resources related to configuration and maintenance of Galaxy servers

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Lesson Slides Hands-on
Galaxy from an administrator's point of view
Ansible
/
Galaxy Installation with Ansible
/

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Lesson Slides Hands-on
Connecting Galaxy to a compute cluster
/
Data Libraries
/
Distributed Object Storage
External Authentication
Galaxy Monitoring with gxadmin
/
Galaxy Monitoring with Reports
Galaxy Monitoring with Telegraf and Grafana
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Galaxy Tool Management with Ephemeris
Mapping Jobs to Destinations
Reference Data with CVMFS
/
Running Jobs on Remote Resources with Pulsar
Training Infrastructure as a Service (TIaaS)
Use Singularity containers for running Galaxy jobs

Other


Assorted other tutorials

Lesson Slides Hands-on
Advanced customisation of a Galaxy instance
Automation with Jenkins
Controlling Galaxy with systemd or Supervisor
/
Deploying a compute cluster in OpenStack via Terraform
Docker and Galaxy
Empathy
Galactic Database
/
Galaxy Database schema
Galaxy Installation on Kubernetes
Galaxy Interactive Tools
/
Galaxy Monitoring
Galaxy on the Cloud
Galaxy Troubleshooting
Gearing towards production
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Managing Galaxy on Kubernetes
Recording Job Metrics
Reference Data with CVMFS without Ansible
Reference Genomes in Galaxy
Server Maintenance and Backups
/
Upgrading Galaxy
User, Group and Quota managment
/
uWSGI

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Maintainers

This material is maintained by:

Björn GrüningBjörn Grüning Martin ČechMartin Čech Helena RascheHelena Rasche Simon GladmanSimon Gladman

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Valentin MarconValentin Marcon Nate CoraorNate Coraor Björn GrüningBjörn Grüning Helena RascheHelena Rasche Martin ČechMartin Čech Saskia HiltemannSaskia Hiltemann Gianmauro CuccuruGianmauro Cuccuru Bérénice BatutBérénice Batut Nicola SoranzoNicola Soranzo Hans-Rudolf HotzHans-Rudolf Hotz Pablo MorenoPablo Moreno Enis AfganEnis Afgan Nuwan GoonasekeraNuwan Goonasekera Alex MahmoudAlex Mahmoud Sergey GolitsynskiySergey Golitsynskiy Simon GladmanSimon Gladman Anthony BretaudeauAnthony Bretaudeau Daniel BlankenbergDaniel Blankenberg Abdulrahman AzabAbdulrahman Azab Marius van den BeekMarius van den Beek Torfinn NomeTorfinn Nome Matthias BerntMatthias Bernt