Galaxy Server administration

Resources related to configuration and maintenance of Galaxy servers

Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Lesson Slides Hands-on
Galaxy from an administrator point of view
slides
Ansible
slides tutorial
Galaxy Installation with Ansible
deploying
tutorial

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Lesson Slides Hands-on
Connecting Galaxy to a compute cluster
jobs
slides tutorial
Distributed Object Storage
storage
slides tutorial
Ephemeris for Galaxy Tool Management
tools
slides tutorial
External Authentication
authentication
slides tutorial
Galaxy Monitoring with Reports
monitoring
tutorial
Galaxy Monitoring with Telegraf and Grafana
monitoring
slides tutorial
Galaxy Monitoring with gxadmin
monitoring
slides tutorial
Reference Data with CVMFS
slides tutorial
Running Jobs on Remote Resources with Pulsar
jobs
tutorial

Other


Assorted other tutorials

Lesson Slides Hands-on
Advanced customisation of a Galaxy instance
slides
Automation with Jenkins
automation
tutorial
Controlling Galaxy with Supervisor
slides
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud
slides tutorial
Docker and Galaxy
slides
Empathy
slides
Galactic Database
slides
Galaxy Database schema
tutorial
Galaxy Installation on Kubernetes
level level level kubernetes
tutorial
Galaxy Monitoring
slides
Galaxy Troubleshooting
slides
Galaxy on the Cloud
slides
Gearing towards production
slides
Managing Galaxy on Kubernetes
level level level kubernetes
tutorial
Reference Genomes in Galaxy
slides
Server Maintenance
slides
The Galaxy Tool Shed
slides
Upgrading Galaxy
slides
User, Group and Quota managment
slides
uWSGI
slides

Maintainers

This material is maintained by:

Björn GrüningBjörn Grüning, Martin ČechMartin Čech, Helena RascheHelena Rasche, Simon GladmanSimon Gladman

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Valentin MarconValentin Marcon, Nate CoraorNate Coraor, Björn GrüningBjörn Grüning, Helena RascheHelena Rasche, Martin ČechMartin Čech, Saskia HiltemannSaskia Hiltemann, Bérénice BatutBérénice Batut, Nicola SoranzoNicola Soranzo, Hans-Rudolf HotzHans-Rudolf Hotz, Pablo MorenoPablo Moreno, Enis AfganEnis Afgan, Nuwan GoonasekeraNuwan Goonasekera, Alex MahmoudAlex Mahmoud, Sergey GolitsynskiySergey Golitsynskiy, Simon GladmanSimon Gladman, Daniel BlankenbergDaniel Blankenberg, Abdulrahman AzabAbdulrahman Azab, Marius van den BeekMarius van den Beek