Galaxy Server administration
Resources related to configuration and maintenance of Galaxy servers
Material
Core
These are the core, foundational topics for the majority of administration in Galaxy.Lesson | Slides | Hands-on |
---|---|---|
Galaxy from an administrator's point of view
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slides Toggle Dropdown | |
Ansible
|
slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Galaxy Installation with Ansible
|
slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Further Learning
These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.Lesson | Slides | Hands-on |
---|---|---|
Connecting Galaxy to a compute cluster
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slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Data Libraries
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slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Distributed Object Storage
|
slides Toggle Dropdown | tutorial Toggle Dropdown |
External Authentication
|
slides Toggle Dropdown | tutorial Toggle Dropdown |
Galaxy Monitoring with gxadmin
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slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Galaxy Monitoring with Reports
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tutorial Toggle Dropdown | |
Galaxy Monitoring with Telegraf and Grafana
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slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Galaxy Tool Management with Ephemeris
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slides Toggle Dropdown | tutorial Toggle Dropdown |
Mapping Jobs to Destinations
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tutorial Toggle Dropdown | |
Reference Data with CVMFS
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slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Running Jobs on Remote Resources with Pulsar
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slides Toggle Dropdown | tutorial Toggle Dropdown |
Training Infrastructure as a Service (TIaaS)
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tutorial Toggle Dropdown | |
Use Singularity containers for running Galaxy jobs
|
tutorial Toggle Dropdown |
Other
search
galaxy-cross
Assorted other tutorials
Lesson | Slides | Hands-on |
---|---|---|
Advanced customisation of a Galaxy instance
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slides Toggle Dropdown | |
Automation with Jenkins
|
tutorial Toggle Dropdown | |
Controlling Galaxy with systemd or Supervisor
|
slides Toggle Dropdown / video | |
Deploying a compute cluster in OpenStack via Terraform
|
slides Toggle Dropdown | tutorial Toggle Dropdown |
Docker and Galaxy
|
slides Toggle Dropdown | |
Empathy
|
slides Toggle Dropdown | |
Galactic Database
|
slides Toggle Dropdown / video | |
Galaxy Database schema
|
tutorial Toggle Dropdown | |
Galaxy Installation on Kubernetes
level level level
|
tutorial Toggle Dropdown | |
Galaxy Interactive Tools
|
slides Toggle Dropdown / video | tutorial Toggle Dropdown |
Galaxy Monitoring
|
slides Toggle Dropdown | |
Galaxy on the Cloud
|
slides Toggle Dropdown | |
Galaxy Troubleshooting
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slides Toggle Dropdown | |
Gearing towards production
|
slides Toggle Dropdown / video | |
Managing Galaxy on Kubernetes
level level level
|
tutorial Toggle Dropdown | |
Recording Job Metrics
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tutorial Toggle Dropdown | |
Reference Data with CVMFS without Ansible
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tutorial Toggle Dropdown | |
Reference Genomes in Galaxy
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slides Toggle Dropdown | |
Server Maintenance and Backups
|
slides Toggle Dropdown / video | |
Upgrading Galaxy
|
slides Toggle Dropdown | |
User, Group and Quota managment
|
slides Toggle Dropdown / video | |
uWSGI
|
slides Toggle Dropdown |
Maintainers
This material is maintained by:
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by: