interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Tomas Klingström
Armin Dadras
Marius van den Beek
Michelle Terese Savage
Helena Rasche
Coline Royaux
Mira Kuntz
Bérénice Batut
Nate Coraor
Gildas Le Corguillé
Yvan Le Bras
Beatriz Serrano-Solano
Elisa Michon
Peter van Heusden
Anthony Bretaudeau
Maria Doyle
Hui Tang
Pauline Seguineau
Björn Grüning
Teresa Müller
Anne Fouilloux
Fotis E. Psomopoulos
Perrine Jégousse
Marie Gramm
Lucille Delisle
Anup Kumar
Daniela Schneider
Toby Hodges
Wendi Bacon
Martin Čech
Mateusz Kuzak
Delphine Lariviere
Matthias Bernt
Daniel Blankenberg
Cristóbal Gallardo
Dennis Lal group
José Manuel Domínguez
Ankerl Yassine
Gianmauro Cuccuru
Simon Gladman
Marie Josse
Saskia Hiltemann
Nicola Soranzo
Kaivan Kamali
Funding
These individuals or organisations provided funding support for the development of this resource
UFR
Antarctic and Southern Ocean Coalition
PNDB
ELIXIR Europe
MNHN
Australian BioCommons
de.NBI
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.