interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Pauline Seguineau
Lucille Delisle
Coline Royaux
Marius van den Beek
Hui Tang
Kaivan Kamali
Anthony Bretaudeau
Saskia Hiltemann
José Manuel Domínguez
Ankerl Yassine
Mira Kuntz
Perrine Jégousse
Bérénice Batut
Helena Rasche
Fotis E. Psomopoulos
Michelle Terese Savage
Teresa Müller
Toby Hodges
Björn Grüning
Wendi Bacon
Daniela Schneider
Martin Čech
Tomas Klingström
Anup Kumar
Simon Gladman
Maria Doyle
Peter van Heusden
Marie Gramm
Nate Coraor
Elisa Michon
Mateusz Kuzak
Armin Dadras
Delphine Lariviere
Nicola Soranzo
Marie Josse
Dennis Lal group
Yvan Le Bras
Gianmauro Cuccuru
Gildas Le Corguillé
Anne Fouilloux
Daniel Blankenberg
Funding
These individuals or organisations provided funding support for the development of this resource
de.NBI
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ELIXIR Europe
UFR
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Australian BioCommons
MNHN
PNDB
Antarctic and Southern Ocean Coalition
The University of Melbourne