interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Armin Dadras
Wendi Bacon
Nicola Soranzo
Mateusz Kuzak
Tomas Klingström
Marius van den Beek
Marie Josse
Ankerl Yassine
Cristóbal Gallardo
Daniela Schneider
Anne Fouilloux
Dennis Lal group
Nate Coraor
Kaivan Kamali
Perrine Jégousse
Saskia Hiltemann
Pauline Seguineau
Lucille Delisle
Matthias Bernt
Marie Gramm
Elisa Michon
Yvan Le Bras
Maria Doyle
Beatriz Serrano-Solano
Teresa Müller
Peter van Heusden
Delphine Lariviere
Michelle Terese Savage
Bérénice Batut
Daniel Blankenberg
Björn Grüning
Toby Hodges
Hui Tang
Gianmauro Cuccuru
Mira Kuntz
José Manuel Domínguez
Simon Gladman
Gildas Le Corguillé
Fotis E. Psomopoulos
Anthony Bretaudeau
Helena Rasche
Anup Kumar
Martin Čech
Coline Royaux
Funding
These individuals or organisations provided funding support for the development of this resource
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
MNHN
Australian BioCommons
UFR
The University of Melbourne
Antarctic and Southern Ocean Coalition
PNDB
Melbourne Bioinformatics
ELIXIR Europe
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
de.NBI
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.