interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Michelle Terese Savage
Marie Gramm
Cristóbal Gallardo
Teresa Müller
Bérénice Batut
Beatriz Serrano-Solano
Ankerl Yassine
Gianmauro Cuccuru
Coline Royaux
Anthony Bretaudeau
Perrine Jégousse
Gildas Le Corguillé
Delphine Lariviere
Toby Hodges
Peter van Heusden
Maria Doyle
Anup Kumar
José Manuel Domínguez
Matthias Bernt
Martin Čech
Mira Kuntz
Mateusz Kuzak
Nicola Soranzo
Daniela Schneider
Dennis Lal group
Helena Rasche
Kaivan Kamali
Hui Tang
Armin Dadras
Saskia Hiltemann
Fotis E. Psomopoulos
Nate Coraor
Lucille Delisle
Yvan Le Bras
Wendi Bacon
Simon Gladman
Anne Fouilloux
Pauline Seguineau
Elisa Michon
Björn Grüning
Daniel Blankenberg
Marie Josse
Tomas Klingström
Marius van den Beek
Funding
These individuals or organisations provided funding support for the development of this resource
The University of Melbourne
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
MNHN
Melbourne Bioinformatics
Antarctic and Southern Ocean Coalition
Australian BioCommons
UFR
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
PNDB
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ELIXIR Europe
de.NBI