interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Hui Tang
Anne Fouilloux
Gildas Le Corguillé
Kaivan Kamali
Saskia Hiltemann
Maria Doyle
Pauline Seguineau
Gianmauro Cuccuru
Nate Coraor
Helena Rasche
Tomas Klingström
Mira Kuntz
Marie Gramm
Coline Royaux
Nicola Soranzo
Armin Dadras
Michelle Terese Savage
Beatriz Serrano-Solano
Elisa Michon
Delphine Lariviere
Matthias Bernt
Marie Josse
Dennis Lal group
Anthony Bretaudeau
Perrine Jégousse
Simon Gladman
Daniel Blankenberg
Wendi Bacon
Cristóbal Gallardo
Lucille Delisle
Marius van den Beek
José Manuel Domínguez
Fotis E. Psomopoulos
Teresa Müller
Peter van Heusden
Yvan Le Bras
Toby Hodges
Ankerl Yassine
Bérénice Batut
Björn Grüning
Anup Kumar
Daniela Schneider
Mateusz Kuzak
Martin Čech
Funding
These individuals or organisations provided funding support for the development of this resource
UFR
Australian BioCommons
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
PNDB
The University of Melbourne
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Antarctic and Southern Ocean Coalition
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
de.NBI
MNHN
ELIXIR Europe