interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Teresa Müller
Marie Josse
Ankerl Yassine
Elisa Michon
Mateusz Kuzak
Anup Kumar
Anthony Bretaudeau
Mira Kuntz
Dennis Lal group
Matthias Bernt
Tomas Klingström
Hui Tang
Marie Gramm
Beatriz Serrano-Solano
Martin Čech
Yvan Le Bras
Simon Gladman
Anne Fouilloux
Nate Coraor
Coline Royaux
Peter van Heusden
Armin Dadras
José Manuel Domínguez
Maria Doyle
Daniela Schneider
Perrine Jégousse
Marius van den Beek
Nicola Soranzo
Gianmauro Cuccuru
Saskia Hiltemann
Michelle Terese Savage
Daniel Blankenberg
Fotis E. Psomopoulos
Pauline Seguineau
Kaivan Kamali
Toby Hodges
Cristóbal Gallardo
Helena Rasche
Wendi Bacon
Lucille Delisle
Delphine Lariviere
Gildas Le Corguillé
Bérénice Batut
Björn Grüning
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
UFR
Melbourne Bioinformatics
de.NBI
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
The University of Melbourne
PNDB
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
Antarctic and Southern Ocean Coalition
MNHN
ELIXIR Europe