interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Teresa Müller
Marie Josse
Elisa Michon
Ankerl Yassine
Beatriz Serrano-Solano
Helena Rasche
Kaivan Kamali
Gildas Le Corguillé
Björn Grüning
Daniela Schneider
Perrine Jégousse
José Manuel Domínguez
Cristóbal Gallardo
Hui Tang
Peter van Heusden
Nicola Soranzo
Simon Gladman
Tomas Klingström
Armin Dadras
Saskia Hiltemann
Yvan Le Bras
Wendi Bacon
Pauline Seguineau
Delphine Lariviere
Coline Royaux
Maria Doyle
Matthias Bernt
Lucille Delisle
Toby Hodges
Daniel Blankenberg
Anne Fouilloux
Bérénice Batut
Martin Čech
Marie Gramm
Nate Coraor
Gianmauro Cuccuru
Mira Kuntz
Fotis E. Psomopoulos
Marius van den Beek
Michelle Terese Savage
Anthony Bretaudeau
Anup Kumar
Dennis Lal group
Mateusz Kuzak
Funding
These individuals or organisations provided funding support for the development of this resource
MNHN
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
PNDB
Australian BioCommons
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ELIXIR Europe
UFR
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
de.NBI
Antarctic and Southern Ocean Coalition