interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling | |||||
| Visualize EBV cube data with Panoply netCDF viewer |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Elisa Michon
Mateusz Kuzak
Michelle Terese Savage
Pauline Seguineau
Tomas Klingström
Fotis E. Psomopoulos
Maria Doyle
Daniel Blankenberg
Daniela Schneider
Delphine Lariviere
Saskia Hiltemann
Coline Royaux
Helena Rasche
Dennis Lal group
Gianmauro Cuccuru
Björn Grüning
Nate Coraor
Bérénice Batut
Yvan Le Bras
Lucille Delisle
Martin Čech
Marie Josse
Kaivan Kamali
José Manuel Domínguez
Peter van Heusden
Anthony Bretaudeau
Simon Gladman
Hui Tang
Teresa Müller
Wendi Bacon
Marius van den Beek
Ankerl Yassine
Mira Kuntz
Marie Gramm
Anup Kumar
Armin Dadras
Nicola Soranzo
Anne Fouilloux
Toby Hodges
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Australian BioCommons
de.NBI
Antarctic and Southern Ocean Coalition
The University of Melbourne
Melbourne Bioinformatics
PNDB
UFR
ELIXIR Europe