interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server Administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Earth Data Science
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and Machine Learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Coline Royaux
Matthias Bernt
Marius van den Beek
Mateusz Kuzak
Björn Grüning
Nate Coraor
Delphine Lariviere
Simon Gladman
Marie Josse
Bérénice Batut
Michelle Terese Savage
Toby Hodges
Lucille Delisle
Marie Gramm
Gianmauro Cuccuru
Beatriz Serrano-Solano
Fotis E. Psomopoulos
Mira Kuntz
Saskia Hiltemann
Pauline Seguineau
Daniel Blankenberg
José Manuel Domínguez
Martin Čech
Cristóbal Gallardo
Elifsu Filiz
Hui Tang
Gildas Le Corguillé
Yvan Le Bras
Anne Fouilloux
Perrine Jégousse
Teresa Müller
Anthony Bretaudeau
Wendi Bacon
Nicola Soranzo
Elisa Michon
Ankerl Yassine
Maria Doyle
Dennis Lal group
Armin Dadras
Kaivan Kamali
Tomas Klingström
Helena Rasche
Peter van Heusden
Daniela Schneider
Anup Kumar
Funding
These individuals or organisations provided funding support for the development of this resource
de.NBI
PNDB
Australian BioCommons
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
MNHN
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
UFR
Antarctic and Southern Ocean Coalition
The University of Melbourne