interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Matthias Bernt
Elisa Michon
Teresa Müller
Pauline Seguineau
Perrine Jégousse
Cristóbal Gallardo
Coline Royaux
Kaivan Kamali
Gianmauro Cuccuru
Beatriz Serrano-Solano
Hui Tang
Nicola Soranzo
Mira Kuntz
Ankerl Yassine
Toby Hodges
Dennis Lal group
Saskia Hiltemann
Anne Fouilloux
Peter van Heusden
Wendi Bacon
José Manuel Domínguez
Delphine Lariviere
Anup Kumar
Tomas Klingström
Daniela Schneider
Yvan Le Bras
Mateusz Kuzak
Marie Gramm
Marie Josse
Michelle Terese Savage
Maria Doyle
Nate Coraor
Daniel Blankenberg
Anthony Bretaudeau
Simon Gladman
Armin Dadras
Martin Čech
Lucille Delisle
Gildas Le Corguillé
Marius van den Beek
Bérénice Batut
Helena Rasche
Björn Grüning
Fotis E. Psomopoulos
Funding
These individuals or organisations provided funding support for the development of this resource
MNHN
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
UFR
Antarctic and Southern Ocean Coalition
ELIXIR Europe
Melbourne Bioinformatics
de.NBI
PNDB
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
The University of Melbourne
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Australian BioCommons