interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Mateusz Kuzak
Fotis E. Psomopoulos
Delphine Lariviere
Mira Kuntz
Hui Tang
Björn Grüning
Pauline Seguineau
Gildas Le Corguillé
Marie Gramm
Anup Kumar
Tomas Klingström
Elisa Michon
Anne Fouilloux
Wendi Bacon
Ankerl Yassine
Perrine Jégousse
Kaivan Kamali
Armin Dadras
Helena Rasche
Lucille Delisle
Dennis Lal group
Michelle Terese Savage
Marius van den Beek
Maria Doyle
José Manuel Domínguez
Daniel Blankenberg
Martin Čech
Peter van Heusden
Gianmauro Cuccuru
Teresa Müller
Coline Royaux
Bérénice Batut
Nicola Soranzo
Marie Josse
Simon Gladman
Toby Hodges
Saskia Hiltemann
Nate Coraor
Yvan Le Bras
Anthony Bretaudeau
Daniela Schneider
Funding
These individuals or organisations provided funding support for the development of this resource
Antarctic and Southern Ocean Coalition
ELIXIR Europe
PNDB
de.NBI
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
UFR
MNHN
Australian BioCommons
The University of Melbourne
Melbourne Bioinformatics
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.