interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Nate Coraor
Peter van Heusden
Maria Doyle
Mira Kuntz
Saskia Hiltemann
Helena Rasche
Daniel Blankenberg
Delphine Lariviere
Marie Gramm
José Manuel Domínguez
Pauline Seguineau
Teresa Müller
Perrine Jégousse
Mateusz Kuzak
Tomas Klingström
Marius van den Beek
Yvan Le Bras
Nicola Soranzo
Fotis E. Psomopoulos
Hui Tang
Armin Dadras
Elisa Michon
Coline Royaux
Dennis Lal group
Anup Kumar
Simon Gladman
Anne Fouilloux
Bérénice Batut
Marie Josse
Daniela Schneider
Ankerl Yassine
Gildas Le Corguillé
Björn Grüning
Cristóbal Gallardo
Matthias Bernt
Wendi Bacon
Michelle Terese Savage
Gianmauro Cuccuru
Kaivan Kamali
Beatriz Serrano-Solano
Martin Čech
Anthony Bretaudeau
Lucille Delisle
Toby Hodges
Funding
These individuals or organisations provided funding support for the development of this resource
MNHN
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
ELIXIR Europe
Melbourne Bioinformatics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Antarctic and Southern Ocean Coalition
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
The University of Melbourne
UFR
PNDB
Australian BioCommons
de.NBI