interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
José Manuel Domínguez
Helena Rasche
Anthony Bretaudeau
Delphine Lariviere
Nicola Soranzo
Michelle Terese Savage
Ankerl Yassine
Daniela Schneider
Gianmauro Cuccuru
Coline Royaux
Wendi Bacon
Kaivan Kamali
Tomas Klingström
Yvan Le Bras
Bérénice Batut
Simon Gladman
Perrine Jégousse
Fotis E. Psomopoulos
Anup Kumar
Hui Tang
Lucille Delisle
Pauline Seguineau
Marie Josse
Armin Dadras
Elisa Michon
Marius van den Beek
Nate Coraor
Martin Čech
Maria Doyle
Mateusz Kuzak
Marie Gramm
Anne Fouilloux
Saskia Hiltemann
Toby Hodges
Daniel Blankenberg
Peter van Heusden
Björn Grüning
Gildas Le Corguillé
Teresa Müller
Mira Kuntz
Dennis Lal group
Funding
These individuals or organisations provided funding support for the development of this resource
de.NBI
MNHN
PNDB
ELIXIR Europe
The University of Melbourne
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
UFR
Australian BioCommons
Antarctic and Southern Ocean Coalition
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.