interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server Administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Earth Data Science
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and Machine Learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Peter van Heusden
Wendi Bacon
Kaivan Kamali
Elifsu Filiz
Armin Dadras
Marie Gramm
Beatriz Serrano-Solano
Cristóbal Gallardo
Pauline Seguineau
Gianmauro Cuccuru
Matthias Bernt
Nicola Soranzo
Fotis E. Psomopoulos
Nate Coraor
Delphine Lariviere
Simon Gladman
Mira Kuntz
Mateusz Kuzak
Anup Kumar
Elisa Michon
Michelle Terese Savage
Tomas Klingström
Ankerl Yassine
Marius van den Beek
Toby Hodges
Anne Fouilloux
Maria Doyle
Marie Josse
Anthony Bretaudeau
José Manuel Domínguez
Helena Rasche
Gildas Le Corguillé
Bérénice Batut
Yvan Le Bras
Saskia Hiltemann
Teresa Müller
Coline Royaux
Hui Tang
Björn Grüning
Martin Čech
Perrine Jégousse
Daniel Blankenberg
Dennis Lal group
Daniela Schneider
Lucille Delisle
Funding
These individuals or organisations provided funding support for the development of this resource
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
Australian BioCommons
PNDB
Antarctic and Southern Ocean Coalition
UFR
Melbourne Bioinformatics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
de.NBI
MNHN
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
The University of Melbourne
ELIXIR Europe