interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Yvan Le Bras
Gildas Le Corguillé
Elisa Michon
Anne Fouilloux
Bérénice Batut
José Manuel Domínguez
Nicola Soranzo
Peter van Heusden
Marius van den Beek
Daniela Schneider
Simon Gladman
Dennis Lal group
Daniel Blankenberg
Matthias Bernt
Delphine Lariviere
Björn Grüning
Tomas Klingström
Nate Coraor
Mateusz Kuzak
Ankerl Yassine
Anup Kumar
Kaivan Kamali
Gianmauro Cuccuru
Mira Kuntz
Pauline Seguineau
Lucille Delisle
Wendi Bacon
Cristóbal Gallardo
Fotis E. Psomopoulos
Perrine Jégousse
Marie Josse
Saskia Hiltemann
Coline Royaux
Marie Gramm
Beatriz Serrano-Solano
Martin Čech
Helena Rasche
Teresa Müller
Toby Hodges
Michelle Terese Savage
Anthony Bretaudeau
Armin Dadras
Maria Doyle
Hui Tang
Funding
These individuals or organisations provided funding support for the development of this resource
UFR
The University of Melbourne
Antarctic and Southern Ocean Coalition
de.NBI
ELIXIR Europe
Australian BioCommons
PNDB
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
MNHN