genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul Ziereporcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rascheorcid logoMateo Boudet avatar Mateo BoudetValentin Loux avatar Valentin LouxSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSimon Gladman avatar Simon Gladmanorcid logoErwan Corre avatar Erwan CorreTwishi Gulati avatar Twishi Gulatiorcid logoMaria Doyle avatar Maria DoyleJasper Ouwerkerk avatar Jasper OuwerkerkGuillaume Gautreau avatar Guillaume Gautreauorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAnna Syme avatar Anna SymeNathan Dunn avatar Nathan Dunnorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia HiltemannEkaterina Polkh avatar Ekaterina PolkhGildas Le Corguillé avatar Gildas Le Corguilléorcid logoJonathan Kreplak avatar Jonathan KreplakEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilAnton Nekrutenko avatar Anton NekrutenkoWilliam Durand avatar William Durandorcid logoAnika Erxleben avatar Anika ErxlebenKenji Fujihara avatar Kenji FujiharaHélène Chiapello avatar Hélène ChiapelloNiall Beard avatar Niall BeardBazante Sanders avatar Bazante Sandersorcid logoLaura Leroi avatar Laura Leroiorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoStéphanie Robin avatar Stéphanie RobinTorsten Seemann avatar Torsten Seemannorcid logoTeresa Müller avatar Teresa Müller

Funding

These individuals or organisations provided funding support for the development of this resource