genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

orcid logoMaria Doyle avatar Maria Doyleorcid logoRomane LIBOUBAN avatar Romane LIBOUBANNathan Dunn avatar Nathan DunnBazante Sanders avatar Bazante SandersHélène Chiapello avatar Hélène Chiapelloorcid logoFelicitas Kindel avatar Felicitas KindelTwishi Gulati avatar Twishi Gulatiorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMateo Boudet avatar Mateo Boudetorcid logoBjörn Grüning avatar Björn GrüningGuillaume Gautreau avatar Guillaume GautreauAnton Nekrutenko avatar Anton Nekrutenkoorcid logoCristóbal Gallardo avatar Cristóbal GallardoGildas Le Corguillé avatar Gildas Le CorguilléKenji Fujihara avatar Kenji Fujiharaorcid logoAnika Erxleben avatar Anika ErxlebenSimon Bray avatar Simon BrayEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoLaura Leroi avatar Laura Leroiorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rascheorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoSimon Gladman avatar Simon Gladmanorcid logoErwan Corre avatar Erwan Correorcid logoAnthony Bretaudeau avatar Anthony BretaudeauNiall Beard avatar Niall BeardWilliam Durand avatar William DurandValentin Loux avatar Valentin Louxorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoTristan Reynolds avatar Tristan ReynoldsTorsten Seemann avatar Torsten Seemannorcid logoAnna Syme avatar Anna SymeEkaterina Polkh avatar Ekaterina Polkhorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoTeresa Müller avatar Teresa Müllerorcid logoStéphanie Robin avatar Stéphanie RobinJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoPaul Zierep avatar Paul Zierep

Funding

These individuals or organisations provided funding support for the development of this resource