genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Pangenome analysis with Roary
Refining Genome Annotations with Apollo (prokaryotes)

Contributors

This material was contributed to by:

Esteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoSaim Momin avatar Saim MominGuillaume Gautreau avatar Guillaume GautreauBazante Sanders avatar Bazante SandersKenji Fujihara avatar Kenji Fujiharaorcid logoMateo Boudet avatar Mateo Boudetorcid logoTristan Reynolds avatar Tristan ReynoldsWilliam Durand avatar William DurandAnton Nekrutenko avatar Anton NekrutenkoEkaterina Polkh avatar Ekaterina Polkhorcid logoMaria Doyle avatar Maria Doyleorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoPaul Zierep avatar Paul Ziereporcid logoBérénice Batut avatar Bérénice BatutHélène Chiapello avatar Hélène Chiapelloorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBjörn Grüning avatar Björn Grüningorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa Müllerorcid logoHelena Rasche avatar Helena Rascheorcid logoLaura Leroi avatar Laura Leroiorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon BrayTwishi Gulati avatar Twishi GulatiNathan Dunn avatar Nathan DunnTorsten Seemann avatar Torsten Seemannorcid logoFelicitas Kindel avatar Felicitas KindelNiall Beard avatar Niall Beardorcid logoMiaomiao Zhou avatar Miaomiao ZhouGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnna Syme avatar Anna Symeorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoSimon Gladman avatar Simon Gladmanorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoNiklas Mayle avatar Niklas MayleValentin Loux avatar Valentin Louxorcid logoErwan Corre avatar Erwan Correorcid logoAlexandre Cormier avatar Alexandre CormierJasper Ouwerkerk avatar Jasper Ouwerkerk

Funding

These individuals or organisations provided funding support for the development of this resource