genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

Kenji Fujihara avatar Kenji Fujiharaorcid logoTristan Reynolds avatar Tristan ReynoldsValentin Loux avatar Valentin Louxorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoHelena Rasche avatar Helena RascheJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoPaul Zierep avatar Paul Ziereporcid logoErwan Corre avatar Erwan CorreNathan Dunn avatar Nathan Dunnorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoBjörn Grüning avatar Björn GrüningGildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon BrayTwishi Gulati avatar Twishi Gulatiorcid logoMiaomiao Zhou avatar Miaomiao ZhouWilliam Durand avatar William Durandorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMateo Boudet avatar Mateo BoudetGuillaume Gautreau avatar Guillaume Gautreauorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnna Syme avatar Anna Symeorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa MüllerBazante Sanders avatar Bazante Sandersorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice BatutHélène Chiapello avatar Hélène Chiapelloorcid logoSimon Gladman avatar Simon Gladmanorcid logoDelphine Lariviere avatar Delphine LariviereNiall Beard avatar Niall Beardorcid logoMaria Doyle avatar Maria DoyleEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilTorsten Seemann avatar Torsten SeemannEkaterina Polkh avatar Ekaterina PolkhAnton Nekrutenko avatar Anton Nekrutenkoorcid logoLaura Leroi avatar Laura Leroi

Funding

These individuals or organisations provided funding support for the development of this resource