genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Pangenome analysis with Roary
Refining Genome Annotations with Apollo (prokaryotes)

Contributors

This material was contributed to by:

orcid logoSaim Momin avatar Saim MominEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoBérénice Batut avatar Bérénice BatutHélène Chiapello avatar Hélène ChiapelloGuillaume Gautreau avatar Guillaume GautreauValentin Loux avatar Valentin LouxSimon Bray avatar Simon Brayorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSaskia Hiltemann avatar Saskia HiltemannGildas Le Corguillé avatar Gildas Le Corguilléorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoHelena Rasche avatar Helena Rascheorcid logoNiklas Mayle avatar Niklas Mayleorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMateo Boudet avatar Mateo Boudetorcid logoSimon Gladman avatar Simon Gladmanorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnthony Bretaudeau avatar Anthony BretaudeauKenji Fujihara avatar Kenji FujiharaNathan Dunn avatar Nathan Dunnorcid logoLaura Leroi avatar Laura LeroiAnton Nekrutenko avatar Anton Nekrutenkoorcid logoErwan Corre avatar Erwan CorreTwishi Gulati avatar Twishi Gulatiorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnna Syme avatar Anna Symeorcid logoBjörn Grüning avatar Björn GrüningEkaterina Polkh avatar Ekaterina PolkhNiall Beard avatar Niall Beardorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoPaul Zierep avatar Paul ZierepBazante Sanders avatar Bazante SandersTorsten Seemann avatar Torsten Seemannorcid logoTeresa Müller avatar Teresa Müllerorcid logoFelicitas Kindel avatar Felicitas KindelWilliam Durand avatar William Durandorcid logoDelphine Lariviere avatar Delphine LariviereJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoMaria Doyle avatar Maria Doyleorcid logoNicola Soranzo avatar Nicola Soranzo

Funding

These individuals or organisations provided funding support for the development of this resource