genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

orcid logoNicola Soranzo avatar Nicola Soranzoorcid logoPaul Zierep avatar Paul ZierepAnton Nekrutenko avatar Anton NekrutenkoKenji Fujihara avatar Kenji FujiharaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMiaomiao Zhou avatar Miaomiao ZhouEkaterina Polkh avatar Ekaterina PolkhTwishi Gulati avatar Twishi Gulatiorcid logoAnna Syme avatar Anna SymeTorsten Seemann avatar Torsten Seemannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoMaria Doyle avatar Maria Doyleorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoDelphine Lariviere avatar Delphine LariviereNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena RascheHélène Chiapello avatar Hélène Chiapelloorcid logoMateo Boudet avatar Mateo BoudetNathan Dunn avatar Nathan DunnJasper Ouwerkerk avatar Jasper OuwerkerkSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura Leroiorcid logoErwan Corre avatar Erwan CorreGuillaume Gautreau avatar Guillaume Gautreauorcid logoTeresa Müller avatar Teresa Müllerorcid logoTristan Reynolds avatar Tristan ReynoldsEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilValentin Loux avatar Valentin Louxorcid logoCristóbal Gallardo avatar Cristóbal GallardoBazante Sanders avatar Bazante Sandersorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoSimon Gladman avatar Simon GladmanWilliam Durand avatar William Durandorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnika Erxleben avatar Anika Erxleben

Funding

These individuals or organisations provided funding support for the development of this resource