genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Pangenome analysis with Roary
Refining Genome Annotations with Apollo (prokaryotes)

Contributors

This material was contributed to by:

Simon Bray avatar Simon BrayWilliam Durand avatar William DurandBazante Sanders avatar Bazante Sandersorcid logoLaura Leroi avatar Laura Leroiorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoHelena Rasche avatar Helena RascheGildas Le Corguillé avatar Gildas Le Corguilléorcid logoStéphanie Robin avatar Stéphanie RobinTwishi Gulati avatar Twishi Gulatiorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBjörn Grüning avatar Björn Grüningorcid logoSaim Momin avatar Saim Mominorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoMateo Boudet avatar Mateo Boudetorcid logoAlexandre Cormier avatar Alexandre CormierKenji Fujihara avatar Kenji FujiharaEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony BretaudeauJasper Ouwerkerk avatar Jasper OuwerkerkHélène Chiapello avatar Hélène Chiapelloorcid logoMaria Doyle avatar Maria DoyleAnton Nekrutenko avatar Anton Nekrutenkoorcid logoErwan Corre avatar Erwan CorreTorsten Seemann avatar Torsten Seemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyNathan Dunn avatar Nathan Dunnorcid logoNiklas Mayle avatar Niklas Mayleorcid logoPaul Zierep avatar Paul Ziereporcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnna Syme avatar Anna SymeEkaterina Polkh avatar Ekaterina PolkhNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoRomane LIBOUBAN avatar Romane LIBOUBANValentin Loux avatar Valentin Louxorcid logoTeresa Müller avatar Teresa Müllerorcid logoSimon Gladman avatar Simon GladmanGuillaume Gautreau avatar Guillaume Gautreau

Funding

These individuals or organisations provided funding support for the development of this resource