genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Pangenome analysis with Roary
Refining Genome Annotations with Apollo (prokaryotes)

Contributors

This material was contributed to by:

Jasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAnna Syme avatar Anna Symeorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoErwan Corre avatar Erwan Correorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoSimon Gladman avatar Simon Gladmanorcid logoMiaomiao Zhou avatar Miaomiao ZhouHélène Chiapello avatar Hélène ChiapelloNathan Dunn avatar Nathan DunnAnton Nekrutenko avatar Anton Nekrutenkoorcid logoMateo Boudet avatar Mateo BoudetValentin Loux avatar Valentin LouxBazante Sanders avatar Bazante SandersGuillaume Gautreau avatar Guillaume Gautreauorcid logoBérénice Batut avatar Bérénice Batutorcid logoTristan Reynolds avatar Tristan ReynoldsSimon Bray avatar Simon Brayorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoJonathan Kreplak avatar Jonathan KreplakKenji Fujihara avatar Kenji Fujiharaorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony BretaudeauTorsten Seemann avatar Torsten Seemannorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoLaura Leroi avatar Laura Leroiorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoPaul Zierep avatar Paul Ziereporcid logoNiklas Mayle avatar Niklas Mayleorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal GallardoWilliam Durand avatar William DurandEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoTeresa Müller avatar Teresa MüllerEkaterina Polkh avatar Ekaterina Polkhorcid logoDeepti Varshney avatar Deepti VarshneyGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMaria Doyle avatar Maria DoyleNiall Beard avatar Niall BeardTwishi Gulati avatar Twishi Gulatiorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSaim Momin avatar Saim Momin

Funding

These individuals or organisations provided funding support for the development of this resource