genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

Niall Beard avatar Niall Beardorcid logoStéphanie Robin avatar Stéphanie RobinJasper Ouwerkerk avatar Jasper OuwerkerkSimon Bray avatar Simon Brayorcid logoAnika Erxleben avatar Anika ErxlebenKenji Fujihara avatar Kenji Fujiharaorcid logoAlexandre Cormier avatar Alexandre CormierValentin Loux avatar Valentin LouxTwishi Gulati avatar Twishi Gulatiorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoSimon Gladman avatar Simon Gladmanorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMateo Boudet avatar Mateo Boudetorcid logoPaul Zierep avatar Paul ZierepEkaterina Polkh avatar Ekaterina Polkhorcid logoTeresa Müller avatar Teresa Müllerorcid logoErwan Corre avatar Erwan CorreEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnna Syme avatar Anna SymeTorsten Seemann avatar Torsten Seemannorcid logoMiaomiao Zhou avatar Miaomiao ZhouHélène Chiapello avatar Hélène Chiapelloorcid logoNicola Soranzo avatar Nicola SoranzoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoHelena Rasche avatar Helena RascheNathan Dunn avatar Nathan Dunnorcid logoFelicitas Kindel avatar Felicitas KindelAnton Nekrutenko avatar Anton Nekrutenkoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoLaura Leroi avatar Laura LeroiBazante Sanders avatar Bazante SandersGuillaume Gautreau avatar Guillaume Gautreauorcid logoMaria Doyle avatar Maria Doyleorcid logoBérénice Batut avatar Bérénice BatutWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource