genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Pangenome analysis with Roary
Refining Genome Annotations with Apollo (prokaryotes)

Contributors

This material was contributed to by:

Twishi Gulati avatar Twishi Gulatiorcid logoFelicitas Kindel avatar Felicitas KindelNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn Grüningorcid logoSimon Gladman avatar Simon Gladmanorcid logoMateo Boudet avatar Mateo Boudetorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoRomane LIBOUBAN avatar Romane LIBOUBANJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAnna Syme avatar Anna Symeorcid logoCristóbal Gallardo avatar Cristóbal GallardoWilliam Durand avatar William Durandorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoErwan Corre avatar Erwan CorreValentin Loux avatar Valentin LouxSimon Bray avatar Simon BrayNathan Dunn avatar Nathan Dunnorcid logoNiklas Mayle avatar Niklas Mayleorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDelphine Lariviere avatar Delphine LariviereEkaterina Polkh avatar Ekaterina PolkhEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilGildas Le Corguillé avatar Gildas Le Corguilléorcid logoStéphanie Robin avatar Stéphanie RobinGuillaume Gautreau avatar Guillaume GautreauHélène Chiapello avatar Hélène Chiapelloorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTeresa Müller avatar Teresa MüllerBazante Sanders avatar Bazante Sandersorcid logoLaura Leroi avatar Laura LeroiAnton Nekrutenko avatar Anton Nekrutenkoorcid logoPaul Zierep avatar Paul Ziereporcid logoSaim Momin avatar Saim Mominorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoTristan Reynolds avatar Tristan ReynoldsTorsten Seemann avatar Torsten Seemannorcid logoMaria Doyle avatar Maria DoyleKenji Fujihara avatar Kenji Fujihara

Funding

These individuals or organisations provided funding support for the development of this resource