genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnika Erxleben avatar Anika ErxlebenAnton Nekrutenko avatar Anton Nekrutenkoorcid logoAlexandre Cormier avatar Alexandre CormierGuillaume Gautreau avatar Guillaume Gautreauorcid logoCristóbal Gallardo avatar Cristóbal GallardoValentin Loux avatar Valentin Louxorcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura LeroiEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoPaul Zierep avatar Paul Ziereporcid logoAnna Syme avatar Anna SymeTwishi Gulati avatar Twishi GulatiWilliam Durand avatar William Durandorcid logoDelphine Lariviere avatar Delphine LariviereSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoErwan Corre avatar Erwan Correorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMaria Doyle avatar Maria Doyleorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa Müllerorcid logoSimon Gladman avatar Simon GladmanHélène Chiapello avatar Hélène Chiapelloorcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoJonathan Kreplak avatar Jonathan KreplakKenji Fujihara avatar Kenji FujiharaTorsten Seemann avatar Torsten SeemannJasper Ouwerkerk avatar Jasper OuwerkerkEkaterina Polkh avatar Ekaterina Polkhorcid logoNicola Soranzo avatar Nicola SoranzoNathan Dunn avatar Nathan Dunnorcid logoMateo Boudet avatar Mateo BoudetBazante Sanders avatar Bazante SandersNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoMiaomiao Zhou avatar Miaomiao Zhou

Funding

These individuals or organisations provided funding support for the development of this resource