genome-annotation

Tutorials covering genome-annotation

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
Comparison of two annotation tools - Helixer and Braker3
From small to large-scale genome comparison
Genome annotation with Braker3
Genome annotation with Helixer
Genome annotation with Prokka
Identification of AMR genes in an assembled bacterial genome
Introduction to Genome Annotation
Masking repeats with RepeatMasker
Refining Genome Annotations with Apollo (prokaryotes)
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Essential genes detection with Transposon insertion sequencing
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc
CRISPR screen analysis

Contributors

This material was contributed to by:

orcid logoAnika Erxleben avatar Anika Erxlebenorcid logoTeresa Müller avatar Teresa Müllerorcid logoStéphanie Robin avatar Stéphanie RobinNathan Dunn avatar Nathan Dunnorcid logoRomane LIBOUBAN avatar Romane LIBOUBANSimon Bray avatar Simon Brayorcid logoMiaomiao Zhou avatar Miaomiao ZhouValentin Loux avatar Valentin Louxorcid logoErwan Corre avatar Erwan CorreJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura LeroiTorsten Seemann avatar Torsten Seemannorcid logoMaria Doyle avatar Maria DoyleTwishi Gulati avatar Twishi Gulatiorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoHelena Rasche avatar Helena RascheWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia HiltemannHélène Chiapello avatar Hélène Chiapelloorcid logoMateo Boudet avatar Mateo Boudetorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoPaul Zierep avatar Paul Ziereporcid logoFelicitas Kindel avatar Felicitas Kindelorcid logoNicola Soranzo avatar Nicola SoranzoGildas Le Corguillé avatar Gildas Le Corguilléorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBérénice Batut avatar Bérénice BatutAnton Nekrutenko avatar Anton NekrutenkoEkaterina Polkh avatar Ekaterina PolkhBazante Sanders avatar Bazante SandersEsteban Perez-Wohlfeil avatar Esteban Perez-WohlfeilGuillaume Gautreau avatar Guillaume Gautreauorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnna Syme avatar Anna Symeorcid logoSimon Gladman avatar Simon GladmanKenji Fujihara avatar Kenji Fujiharaorcid logoJonathan Kreplak avatar Jonathan KreplakNiall Beard avatar Niall Beard

Funding

These individuals or organisations provided funding support for the development of this resource