admin

Tutorials covering admin

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Galaxy Server administration

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy on the Cloud
Advanced customisation of a Galaxy instance
Alternative Celery Deployment for Galaxy
ansible
Ansible
ansible
Automation with Jenkins
ansible automation
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage
Connecting Galaxy to a compute cluster
jobs ansible git-gat
Controlling Galaxy with systemd or Supervisor
Create a subdomain for your community on UseGalaxy.eu
subdomain community earth-system interactive-tools
Customizing the look of Galaxy
git-gat
Customizing the look of Galaxy (Manual)
Data Libraries
ansible storage git-gat
Deploying a Beacon v1 in Galaxy
ga4gh beacon git-gat
Distributed Object Storage
ansible storage
Docker and Galaxy
Empathy
Enable upload via FTP
data git-gat
External Authentication
authentication
Galactic Database
Galaxy Administrator Time Burden and Technology Usage
deploying maintenance survey
Galaxy Database schema
Galaxy Installation with Ansible
ansible deploying git-gat
Galaxy Interactive Tools
ansible interactive-tools
Galaxy Monitoring
Galaxy Monitoring with Reports
ansible monitoring git-gat broken
Galaxy Monitoring with Telegraf and Grafana
ansible monitoring git-gat
Galaxy Monitoring with gxadmin
monitoring ansible git-gat
Galaxy Tool Management with Ephemeris
tools git-gat
Galaxy Troubleshooting
Galaxy from an administrator's point of view
Gearing towards production
How I learned to stop worrying and love the systemd
ansible systemd
Mapping Jobs to Destinations using TPV
jobs git-gat
Monitoring Galaxy and Pulsar with Sentry
ansible git-gat
Performant Uploads with TUS
Reference Data with CVMFS
ansible git-gat
Reference Data with CVMFS without Ansible
Reference Data with Data Managers
Running Jobs on Remote Resources with Pulsar
ansible jobs git-gat
Server Maintenance: Cleanup, Backup, and Restoration
ansible deploying git-gat
Setting up Celery Workers for Galaxy
ansible git-gat
Training Infrastructure as a Service (TIaaS)
ansible training jobs git-gat
Upgrading Galaxy
ansible
Use Apptainer containers for running Galaxy jobs
jobs ansible git-gat
User, Role, Group, Quota, and Authentication managment
uWSGI
Galaxy Installation on Kubernetes
kubernetes
Managing Galaxy on Kubernetes
kubernetes
Galaxy usage on SURF Research Cloud
deploying
Pulsar usage on SURF Research Cloud
deploying
Deploying Tailscale/Headscale for private mesh networking
wireguard networking
Deploying Wireguard for private mesh networking
wireguard networking
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud

Contributors

This material was contributed to by:

Kweyakie Afi Blebo avatar Kweyakie Afi Bleboorcid logoMartin Čech avatar Martin ČechMatthias Bernt avatar Matthias BerntMarie Josse avatar Marie Josseorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoNicola Soranzo avatar Nicola SoranzoMirela Minkova avatar Mirela MinkovaNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoLaila Los avatar Laila LosTomas Vondrak avatar Tomas VondrakPablo Moreno avatar Pablo MorenoNiall Beard avatar Niall Beardorcid logoVlad Visan avatar Vlad Visanorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice BatutValentin Marcon avatar Valentin MarconBartosz Walkowicz avatar Bartosz Walkowiczorcid logoMira Kuntz avatar Mira KuntzDawa Ometto avatar Dawa Omettoorcid logoTomas Klingström avatar Tomas KlingströmMarius van den Beek avatar Marius van den Beekorcid logoJohn Davis avatar John Davisorcid logoYvan Le Bras avatar Yvan Le BrasGildas Le Corguillé avatar Gildas Le CorguilléEnis Afgan avatar Enis Afganorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningAlex Mahmoud avatar Alex Mahmoudorcid logoArmin Dadras avatar Armin Dadrasorcid logoNate Coraor avatar Nate CoraorTunc Kayikcioglu avatar Tunc KayikciogluCatherine Bromhead avatar Catherine Bromheadorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruEdwin den Haas avatar Edwin den HaasMélanie Petera avatar Mélanie Peteraorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTorfinn Nome avatar Torfinn NomeAbdulrahman Azab avatar Abdulrahman Azaborcid logoŁukasz Opioła avatar Łukasz Opiołaorcid logoPaul De Geest avatar Paul De Geestorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoPeter van Heusden avatar Peter van HeusdenDave B. avatar Dave B.orcid logoJohn Chilton avatar John Chiltonorcid logoSimon Gladman avatar Simon Gladmanorcid logoLucille Delisle avatar Lucille Delisleorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzJosé Manuel Domínguez avatar José Manuel Domínguez

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe
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CINECA
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de.NBI
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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SURF
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Melbourne Bioinformatics
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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The University of Melbourne