admin

Tutorials covering admin

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Galaxy Server Administration

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy on the Cloud
Galaxy from an administrator's point of view
Galaxy Installation on Kubernetes
kubernetes
Managing Galaxy on Kubernetes
kubernetes
Galaxy usage on SURF Research Cloud
deploying
Pulsar usage on SURF Research Cloud
deploying
Deploying Tailscale/Headscale for private mesh networking
wireguard networking
Deploying Wireguard for private mesh networking
wireguard networking
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud
Advanced customisation of a Galaxy instance
Alternative Celery Deployment for Galaxy
ansible
Ansible
ansible
Automation with Jenkins
ansible automation
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage
Connecting Galaxy to a compute cluster
jobs ansible git-gat
Controlling Galaxy with systemd or Supervisor
Create a subdomain for your community on UseGalaxy.eu
subdomain community earth-system interactive-tools
Customizing the look of Galaxy
git-gat
Customizing the look of Galaxy (Manual)
Data Libraries
ansible storage git-gat
Deploying a Beacon v1 in Galaxy
ga4gh beacon git-gat
Distributed Object Storage
ansible storage
Docker and Galaxy
Empathy
Enable upload via FTP
data git-gat
External Authentication
authentication
Galactic Database
Galaxy Administrator Time Burden and Technology Usage
deploying maintenance survey
Galaxy Database schema
Galaxy Installation with Ansible
ansible deploying git-gat
Galaxy Interactive Tools
ansible interactive-tools
Galaxy Monitoring
Galaxy Monitoring with Reports
ansible monitoring git-gat broken
Galaxy Monitoring with Telegraf and Grafana
ansible monitoring git-gat
Galaxy Monitoring with gxadmin
monitoring ansible git-gat
Galaxy Tool Management with Ephemeris
tools git-gat
Galaxy Troubleshooting
Gearing towards production
How I learned to stop worrying and love the systemd
ansible systemd
Mapping Jobs to Destinations using TPV
jobs git-gat
Monitoring Galaxy and Pulsar with Sentry
ansible git-gat
Performant Uploads with TUS
Reference Data with CVMFS
ansible git-gat
Reference Data with CVMFS without Ansible
Reference Data with Data Managers
Running Jobs on Remote Resources with Pulsar
ansible jobs git-gat
Server Maintenance: Cleanup, Backup, and Restoration
ansible deploying git-gat
Setting up Celery Workers for Galaxy
ansible git-gat
Training Infrastructure as a Service (TIaaS)
ansible training jobs git-gat
Upgrading Galaxy
ansible
Use Apptainer containers for running Galaxy jobs
jobs ansible git-gat
User, Role, Group, Quota, and Authentication managment
uWSGI

Contributors

This material was contributed to by:

orcid logoŁukasz Opioła avatar Łukasz OpiołaNuwan Goonasekera avatar Nuwan GoonasekeraGildas Le Corguillé avatar Gildas Le CorguilléDawa Ometto avatar Dawa Omettoorcid logoSimon Gladman avatar Simon Gladmanorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoMartin Čech avatar Martin ČechAlex Mahmoud avatar Alex MahmoudNiall Beard avatar Niall Beardorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoBjörn Grüning avatar Björn GrüningMirela Minkova avatar Mirela Minkovaorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoPaul De Geest avatar Paul De Geestorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoSaskia Hiltemann avatar Saskia HiltemannTomas Vondrak avatar Tomas Vondrakorcid logoJohn Davis avatar John DavisEdwin den Haas avatar Edwin den Haasorcid logoMarius van den Beek avatar Marius van den BeekKweyakie Afi Blebo avatar Kweyakie Afi Bleboorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzBartosz Walkowicz avatar Bartosz Walkowiczorcid logoBérénice Batut avatar Bérénice BatutMélanie Pétéra avatar Mélanie Pétéraorcid logoTorfinn Nome avatar Torfinn Nomeorcid logoMarie Josse avatar Marie JosseTunc Kayikcioglu avatar Tunc KayikciogluDave B. avatar Dave B.Abdulrahman Azab avatar Abdulrahman Azaborcid logoLucille Delisle avatar Lucille Delisleorcid logoArmin Dadras avatar Armin Dadrasorcid logoTomas Klingström avatar Tomas Klingströmorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoNicola Soranzo avatar Nicola SoranzoPablo Moreno avatar Pablo Morenoorcid logoVlad Visan avatar Vlad VisanJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoMira Kuntz avatar Mira Kuntzorcid logoJohn Chilton avatar John ChiltonCatherine Bromhead avatar Catherine Bromheadorcid logoNate Coraor avatar Nate CoraorEnis Afgan avatar Enis AfganValentin Marcon avatar Valentin Marconorcid logoLaila Los avatar Laila Losorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMatthias Bernt avatar Matthias Bernt

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ELIXIR Europe
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de.NBI
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CINECA
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SURF
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UFR
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Melbourne Bioinformatics