admin

Tutorials covering admin

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Galaxy Server administration

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy on the Cloud
Galaxy from an administrator's point of view
Galaxy Installation on Kubernetes
kubernetes
Managing Galaxy on Kubernetes
kubernetes
Galaxy usage on SURF Research Cloud
deploying
Pulsar usage on SURF Research Cloud
deploying
Deploying Tailscale/Headscale for private mesh networking
wireguard networking
Deploying Wireguard for private mesh networking
wireguard networking
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud
Advanced customisation of a Galaxy instance
Alternative Celery Deployment for Galaxy
ansible
Ansible
ansible
Automation with Jenkins
ansible automation
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage
Connecting Galaxy to a compute cluster
jobs ansible git-gat
Controlling Galaxy with systemd or Supervisor
Create a subdomain for your community on UseGalaxy.eu
subdomain community earth-system interactive-tools
Customizing the look of Galaxy
git-gat
Customizing the look of Galaxy (Manual)
Data Libraries
ansible storage git-gat
Deploying a Beacon v1 in Galaxy
ga4gh beacon git-gat
Distributed Object Storage
ansible storage
Docker and Galaxy
Empathy
Enable upload via FTP
data git-gat
External Authentication
authentication
Galactic Database
Galaxy Administrator Time Burden and Technology Usage
deploying maintenance survey
Galaxy Database schema
Galaxy Installation with Ansible
ansible deploying git-gat
Galaxy Interactive Tools
ansible interactive-tools
Galaxy Monitoring
Galaxy Monitoring with Reports
ansible monitoring git-gat broken
Galaxy Monitoring with Telegraf and Grafana
ansible monitoring git-gat
Galaxy Monitoring with gxadmin
monitoring ansible git-gat
Galaxy Tool Management with Ephemeris
tools git-gat
Galaxy Troubleshooting
Gearing towards production
How I learned to stop worrying and love the systemd
ansible systemd
Mapping Jobs to Destinations using TPV
jobs git-gat
Monitoring Galaxy and Pulsar with Sentry
ansible git-gat
Performant Uploads with TUS
Reference Data with CVMFS
ansible git-gat
Reference Data with CVMFS without Ansible
Reference Data with Data Managers
Running Jobs on Remote Resources with Pulsar
ansible jobs git-gat
Server Maintenance: Cleanup, Backup, and Restoration
ansible deploying git-gat
Setting up Celery Workers for Galaxy
ansible git-gat
Training Infrastructure as a Service (TIaaS)
ansible training jobs git-gat
Upgrading Galaxy
ansible
Use Apptainer containers for running Galaxy jobs
jobs ansible git-gat
User, Role, Group, Quota, and Authentication managment
uWSGI

Contributors

This material was contributed to by:

Abdulrahman Azab avatar Abdulrahman AzabNuwan Goonasekera avatar Nuwan GoonasekeraGildas Le Corguillé avatar Gildas Le CorguilléPablo Moreno avatar Pablo MorenoJosé Manuel Domínguez avatar José Manuel DomínguezTunc Kayikcioglu avatar Tunc Kayikciogluorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoMira Kuntz avatar Mira Kuntzorcid logoMarie Josse avatar Marie Josseorcid logoVlad Visan avatar Vlad VisanDave B. avatar Dave B.orcid logoJohn Chilton avatar John Chiltonorcid logoYvan Le Bras avatar Yvan Le BrasDawa Ometto avatar Dawa Omettoorcid logoŁukasz Opioła avatar Łukasz OpiołaCatherine Bromhead avatar Catherine BromheadAlex Mahmoud avatar Alex Mahmoudorcid logoPeter van Heusden avatar Peter van HeusdenValentin Marcon avatar Valentin Marconorcid logoTomas Klingström avatar Tomas Klingströmorcid logoLucille Delisle avatar Lucille Delisleorcid logoJohn Davis avatar John Davisorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoBérénice Batut avatar Bérénice BatutMélanie Petera avatar Mélanie PeteraEnis Afgan avatar Enis Afganorcid logoMartin Čech avatar Martin Čechorcid logoBjörn Grüning avatar Björn Grüningorcid logoMatthias Bernt avatar Matthias BerntMirela Minkova avatar Mirela MinkovaTomas Vondrak avatar Tomas VondrakNiall Beard avatar Niall Beardorcid logoHelena Rasche avatar Helena RascheBartosz Walkowicz avatar Bartosz Walkowiczorcid logoNate Coraor avatar Nate CoraorKweyakie Afi Blebo avatar Kweyakie Afi Bleboorcid logoSimon Gladman avatar Simon Gladmanorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoArmin Dadras avatar Armin Dadrasorcid logoPaul De Geest avatar Paul De GeestEdwin den Haas avatar Edwin den Haasorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMarius van den Beek avatar Marius van den Beekorcid logoLaila Los avatar Laila Losorcid logoTorfinn Nome avatar Torfinn Nomeorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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CINECA
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The University of Melbourne
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ELIXIR Europe
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Melbourne Bioinformatics
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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Australian BioCommons
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de.NBI
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SURF