admin

Tutorials covering admin

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Galaxy Server administration

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy on the Cloud
Advanced customisation of a Galaxy instance
Alternative Celery Deployment for Galaxy
ansible
Ansible
ansible
Automation with Jenkins
ansible automation
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage
Connecting Galaxy to a compute cluster
jobs ansible git-gat
Controlling Galaxy with systemd or Supervisor
Create a subdomain for your community on UseGalaxy.eu
subdomain community earth-system interactive-tools
Customizing the look of Galaxy
git-gat
Customizing the look of Galaxy (Manual)
Data Libraries
ansible storage git-gat
Deploying a Beacon v1 in Galaxy
ga4gh beacon git-gat
Distributed Object Storage
ansible storage
Docker and Galaxy
Empathy
Enable upload via FTP
data git-gat
External Authentication
authentication
Galactic Database
Galaxy Administrator Time Burden and Technology Usage
deploying maintenance survey
Galaxy Database schema
Galaxy Installation with Ansible
ansible deploying git-gat
Galaxy Interactive Tools
ansible interactive-tools
Galaxy Monitoring
Galaxy Monitoring with Reports
ansible monitoring git-gat broken
Galaxy Monitoring with Telegraf and Grafana
ansible monitoring git-gat
Galaxy Monitoring with gxadmin
monitoring ansible git-gat
Galaxy Tool Management with Ephemeris
tools git-gat
Galaxy Troubleshooting
Galaxy from an administrator's point of view
Gearing towards production
How I learned to stop worrying and love the systemd
ansible systemd
Mapping Jobs to Destinations using TPV
jobs git-gat
Monitoring Galaxy and Pulsar with Sentry
ansible git-gat
Performant Uploads with TUS
Reference Data with CVMFS
ansible git-gat
Reference Data with CVMFS without Ansible
Reference Data with Data Managers
Running Jobs on Remote Resources with Pulsar
ansible jobs git-gat
Server Maintenance: Cleanup, Backup, and Restoration
ansible deploying git-gat
Setting up Celery Workers for Galaxy
ansible git-gat
Training Infrastructure as a Service (TIaaS)
ansible training jobs git-gat
Upgrading Galaxy
ansible
Use Apptainer containers for running Galaxy jobs
jobs ansible git-gat
User, Role, Group, Quota, and Authentication managment
uWSGI
Galaxy Installation on Kubernetes
kubernetes
Managing Galaxy on Kubernetes
kubernetes
Galaxy usage on SURF Research Cloud
deploying
Pulsar usage on SURF Research Cloud
deploying
Deploying Tailscale/Headscale for private mesh networking
wireguard networking
Deploying Wireguard for private mesh networking
wireguard networking
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud

Contributors

This material was contributed to by:

orcid logoMartin Čech avatar Martin Čechorcid logoNate Coraor avatar Nate Coraororcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola SoranzoNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDaniel Blankenberg avatar Daniel BlankenbergTomas Vondrak avatar Tomas Vondrakorcid logoVlad Visan avatar Vlad Visanorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoJohn Davis avatar John DavisGildas Le Corguillé avatar Gildas Le Corguilléorcid logoSimon Gladman avatar Simon Gladmanorcid logoBjörn Grüning avatar Björn GrüningEdwin den Haas avatar Edwin den HaasMarie Josse avatar Marie JosseNiall Beard avatar Niall Beardorcid logoArmin Dadras avatar Armin Dadrasorcid logoLaila Los avatar Laila Losorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoHelena Rasche avatar Helena Rascheorcid logoJohn Chilton avatar John ChiltonEnis Afgan avatar Enis AfganPablo Moreno avatar Pablo MorenoValentin Marcon avatar Valentin Marconorcid logoPeter van Heusden avatar Peter van HeusdenMarius van den Beek avatar Marius van den BeekBartosz Walkowicz avatar Bartosz Walkowiczorcid logoPaul De Geest avatar Paul De GeestCatherine Bromhead avatar Catherine Bromheadorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruAbdulrahman Azab avatar Abdulrahman Azaborcid logoMira Kuntz avatar Mira Kuntzorcid logoTomas Klingström avatar Tomas KlingströmAlex Mahmoud avatar Alex MahmoudJosé Manuel Domínguez avatar José Manuel DomínguezMirela Minkova avatar Mirela Minkovaorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoCristóbal Gallardo avatar Cristóbal GallardoKweyakie Afi Blebo avatar Kweyakie Afi BleboDawa Ometto avatar Dawa Omettoorcid logoŁukasz Opioła avatar Łukasz OpiołaMélanie Petera avatar Mélanie PeteraDave B. avatar Dave B.orcid logoLucille Delisle avatar Lucille Delisleorcid logoTorfinn Nome avatar Torfinn NomeMatthias Bernt avatar Matthias BerntTunc Kayikcioglu avatar Tunc Kayikcioglu

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Melbourne Bioinformatics
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CINECA
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SURF
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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The University of Melbourne