admin

Tutorials covering admin

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Galaxy Server administration

Lesson Slides Hands-on Recordings Input dataset Workflows
Galaxy on the Cloud
Advanced customisation of a Galaxy instance
Alternative Celery Deployment for Galaxy
ansible
Ansible
ansible
Automation with Jenkins
ansible automation
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)
storage
Connecting Galaxy to a compute cluster
jobs ansible git-gat
Controlling Galaxy with systemd or Supervisor
Create a subdomain for your community on UseGalaxy.eu
subdomain community earth-system interactive-tools
Customizing the look of Galaxy
git-gat
Customizing the look of Galaxy (Manual)
Data Libraries
ansible storage git-gat
Deploying a Beacon v1 in Galaxy
ga4gh beacon git-gat
Distributed Object Storage
ansible storage
Docker and Galaxy
Empathy
Enable upload via FTP
data git-gat
External Authentication
authentication
Galactic Database
Galaxy Administrator Time Burden and Technology Usage
deploying maintenance survey
Galaxy Database schema
Galaxy Installation with Ansible
ansible deploying git-gat
Galaxy Interactive Tools
ansible interactive-tools
Galaxy Monitoring
Galaxy Monitoring with Reports
ansible monitoring git-gat broken
Galaxy Monitoring with Telegraf and Grafana
ansible monitoring git-gat
Galaxy Monitoring with gxadmin
monitoring ansible git-gat
Galaxy Tool Management with Ephemeris
tools git-gat
Galaxy Troubleshooting
Galaxy from an administrator's point of view
Gearing towards production
How I learned to stop worrying and love the systemd
ansible systemd
Mapping Jobs to Destinations using TPV
jobs git-gat
Monitoring Galaxy and Pulsar with Sentry
ansible git-gat
Performant Uploads with TUS
Reference Data with CVMFS
ansible git-gat
Reference Data with CVMFS without Ansible
Reference Data with Data Managers
Running Jobs on Remote Resources with Pulsar
ansible jobs git-gat
Server Maintenance: Cleanup, Backup, and Restoration
ansible deploying git-gat
Setting up Celery Workers for Galaxy
ansible git-gat
Training Infrastructure as a Service (TIaaS)
ansible training jobs git-gat
Upgrading Galaxy
ansible
Use Apptainer containers for running Galaxy jobs
jobs ansible git-gat
User, Role, Group, Quota, and Authentication managment
uWSGI
Galaxy Installation on Kubernetes
kubernetes
Managing Galaxy on Kubernetes
kubernetes
Galaxy usage on SURF Research Cloud
deploying
Pulsar usage on SURF Research Cloud
deploying
Deploying Tailscale/Headscale for private mesh networking
wireguard networking
Deploying Wireguard for private mesh networking
wireguard networking
Deploying a compute cluster in OpenStack via Terraform
terraform deploying cloud

Contributors

This material was contributed to by:

orcid logoDaniel Blankenberg avatar Daniel BlankenbergTunc Kayikcioglu avatar Tunc Kayikciogluorcid logoŁukasz Opioła avatar Łukasz OpiołaTomas Vondrak avatar Tomas VondrakBartosz Walkowicz avatar Bartosz Walkowiczorcid logoLaila Los avatar Laila LosAbdulrahman Azab avatar Abdulrahman AzabGildas Le Corguillé avatar Gildas Le Corguilléorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoVlad Visan avatar Vlad Visanorcid logoPaul De Geest avatar Paul De Geestorcid logoHelena Rasche avatar Helena Rascheorcid logoTomas Klingström avatar Tomas Klingströmorcid logoJohn Davis avatar John DavisMarie Josse avatar Marie Josseorcid logoBjörn Grüning avatar Björn Grüningorcid logoJohn Chilton avatar John ChiltonEdwin den Haas avatar Edwin den Haasorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruNiall Beard avatar Niall BeardAlex Mahmoud avatar Alex MahmoudValentin Marcon avatar Valentin MarconNuwan Goonasekera avatar Nuwan Goonasekeraorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzJosé Manuel Domínguez avatar José Manuel DomínguezEnis Afgan avatar Enis Afganorcid logoNate Coraor avatar Nate CoraorDawa Ometto avatar Dawa Omettoorcid logoSimon Gladman avatar Simon Gladmanorcid logoMira Kuntz avatar Mira Kuntzorcid logoArmin Dadras avatar Armin DadrasKweyakie Afi Blebo avatar Kweyakie Afi Bleboorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTorfinn Nome avatar Torfinn Nomeorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoMartin Čech avatar Martin ČechCatherine Bromhead avatar Catherine Bromheadorcid logoCristóbal Gallardo avatar Cristóbal GallardoPablo Moreno avatar Pablo Morenoorcid logoLucille Delisle avatar Lucille DelisleMirela Minkova avatar Mirela MinkovaDave B. avatar Dave B.Mélanie Petera avatar Mélanie Peteraorcid logoSaskia Hiltemann avatar Saskia HiltemannMarius van den Beek avatar Marius van den Beekorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoAnne Fouilloux avatar Anne FouillouxMatthias Bernt avatar Matthias Berntorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

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Australian BioCommons
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Melbourne Bioinformatics
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ELIXIR Europe
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de.NBI
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Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
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The University of Melbourne
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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CINECA
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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SURF
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UFR