Teresa Müller

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

• Microbiome / Identification of the micro-organisms in a beer using Nanopore sequencing ✍️ 🧐
• Microbiome / Calculating α and β diversity from microbiome taxonomic data 🧐
• Microbiome / Binning of metagenomic sequencing data 🧐
• Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
• Single Cell / Generating a single cell matrix using Alevin 🧐
• Single Cell / Clustering 3K PBMCs with Scanpy 🧐
• Single Cell / Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) 🧐
• Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data 🧐
• Assembly / Chloroplast genome assembly 🧐
• Assembly / Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data 🧐
• Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 🧐
• Assembly / ERGA post-assembly QC 🧐
• Sequence analysis / Mapping 🧐
• Sequence analysis / Quality Control 🧐
• Sequence analysis / Quality and contamination control in bacterial isolate using Illumina MiSeq Data 🧐
• Statistics and machine learning / Deep Learning (Part 3) - Convolutional neural networks (CNN) 🧐
• Statistics and machine learning / Fine tune large protein model (ProtTrans) using HuggingFace 🧐
• Statistics and machine learning / Classification in Machine Learning 🧐
• Contributing to the Galaxy Training Material / Running the GTN website online using GitHub CodeSpaces 📝
• Foundations of Data Science / Learning about one gene across biological resources and formats ✍️ 🧐
• Foundations of Data Science / One protein along the UniProt page 🧐
• Transcriptomics / Visualization of RNA-Seq results with Volcano Plot 🧐
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 🧐
• Genome Annotation / Long non-coding RNAs (lncRNAs) annotation with FEELnc 🧐
• Genome Annotation / Bacterial Genome Annotation 🧐
• Introduction to Galaxy Analyses / From peaks to genes 📝
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐

Slides

• Single Cell / Single-cell Formats and Resources 🧐

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🎪 🧑‍🏫
• Galaxy Training Academy 2024 🎪 🧑‍🏫

GitHub Activity

github Issues Reported

26 Merged Pull Requests

See all of the github Pull Requests and github Commits by Teresa Müller.

• remove draft from uniprot tutorial
  data-science
• Update codespace
  contributing
• New events
  template-and-tools
• Update ref based
  transcriptomics
• updated deseq2 paramter selection
  transcriptomics

Reviewed 35 PRs

We love our community reviewing each other's work!

• Add an FAQ to explain how to prepare a tutorial to support tutorial mode
  faqs
• New events
  template-and-tools
• github [Google Form] New Recording Submission for Generating a single cell matrix using Alevin
  single-cell
• github [Google Form] New Recording Submission! Machine learning CNN
  statistics
• github [Google Form] New Recording Submission for ERGA post-assembly QC
  assembly

News

External Links

Favourite Topics

Favourite Formats