Plants
Set of tutorials from various topics that use plant datasets for analysis
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney
Saskia Hiltemann
Contributors
This material was contributed to by:
Cristina Martins Rodrigues
Saskia Hiltemann
Sabrina Zander
Björn Grüning
Pavankumar Videm
Wendi Bacon
Deepti Varshney
Tom Brown
Cristóbal Gallardo
Kevin Frey
Martin Kuhl
Helena Rasche
Stella Eggels
Esteban Perez-Wohlfeil
Fabian Recktenwald
Delphine Lariviere
Mehmet Tekman
Anna Syme
Dominik Brilhaus
Beatriz Serrano-Solano
Funding
These individuals or organisations provided funding support for the development of this resource
