Plants
Set of tutorials from various topics that use plant datasets for analysis
For any question or discussions related to this topic, or to connect with others in the community, please visit the community chat:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Chloroplast genome assembly | |||||
ERGA post-assembly QC | |||||
Large genome assembly and polishing |
FAIR Data, Workflows, and Research
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
DataPLANT ARCs |
Genome Annotation
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
From small to large-scale genome comparison |
Microbiome
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
16S Microbial analysis with Nanopore data |
Sequence analysis
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
NCBI BLAST+ against the MAdLand |
Single Cell
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Whole transcriptome analysis of Arabidopsis thaliana |
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney Saskia HiltemannContributors
This material was contributed to by:
Beatriz Serrano-Solano Nate Coraor Wendi Bacon Fabian Recktenwald Willem de Koning Teresa Müller Dominik Brilhaus Cristóbal Gallardo Saim Momin Stella Eggels Pavankumar Videm Esteban Perez-Wohlfeil Martin Kuhl Helena Rasche Tom Brown Anthony Bretaudeau Kevin Frey Cristina Martins Rodrigues Mehmet Tekman Saskia Hiltemann Deepti Varshney Björn Grüning Sabrina Zander Delphine Lariviere Bérénice Batut Anna SymeFunding
These individuals or organisations provided funding support for the development of this resource