Plants

Set of tutorials from various topics that use plant datasets for analysis

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
ERGA post-assembly QC
Large genome assembly and polishing

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
NCBI BLAST+ against the MAdLand

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana

Editorial Board

This material is reviewed by our Editorial Board:

Deepti Varshney avatar Deepti Varshney orcid logoSaskia Hiltemann avatar Saskia Hiltemann

Contributors

This material was contributed to by:

orcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solano orcid logoNate Coraor avatar Nate Coraor orcid logoWendi Bacon avatar Wendi Bacon Fabian Recktenwald avatar Fabian Recktenwald Willem de Koning avatar Willem de Koning Teresa Müller avatar Teresa Müller orcid logoDominik Brilhaus avatar Dominik Brilhaus orcid logoCristóbal Gallardo avatar Cristóbal Gallardo orcid logoSaim Momin avatar Saim Momin Stella Eggels avatar Stella Eggels orcid logoPavankumar Videm avatar Pavankumar Videm Esteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeil orcid logoMartin Kuhl avatar Martin Kuhl orcid logoHelena Rasche avatar Helena Rasche orcid logoTom Brown avatar Tom Brown orcid logoAnthony Bretaudeau avatar Anthony Bretaudeau orcid logoKevin Frey avatar Kevin Frey orcid logoCristina Martins Rodrigues avatar Cristina Martins Rodrigues Mehmet Tekman avatar Mehmet Tekman orcid logoSaskia Hiltemann avatar Saskia Hiltemann Deepti Varshney avatar Deepti Varshney orcid logoBjörn Grüning avatar Björn Grüning orcid logoSabrina Zander avatar Sabrina Zander orcid logoDelphine Lariviere avatar Delphine Lariviere orcid logoBérénice Batut avatar Bérénice Batut orcid logoAnna Syme avatar Anna Syme

Funding

These individuals or organisations provided funding support for the development of this resource