one-health

Tutorials covering one-health

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Computational chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Contributors

This material was contributed to by:

orcid logoPeter van Heusden avatar Peter van Heusdenorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTeresa Müller avatar Teresa Müllerorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHelena Rasche avatar Helena RascheThoba Lose avatar Thoba Loseorcid logoSimon Gladman avatar Simon Gladmanorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTomas Klingström avatar Tomas KlingströmMélanie Petera avatar Mélanie PeteraJasper Ouwerkerk avatar Jasper OuwerkerkGalo A. Goig avatar Galo A. Goigorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoDaniela Brites avatar Daniela BritesBazante Sanders avatar Bazante SandersAnton Nekrutenko avatar Anton Nekrutenkoorcid logoBjörn Grüning avatar Björn Grüningorcid logoDave Clements avatar Dave ClementsChristoph Stritt avatar Christoph Strittorcid logoTristan Reynolds avatar Tristan ReynoldsMarius van den Beek avatar Marius van den Beekorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoLucille Delisle avatar Lucille Delisleorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoLinelle Abueg avatar Linelle Abuegorcid logoMiaomiao Zhou avatar Miaomiao ZhouSimon Bray avatar Simon Bray

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
Australian BioCommons
Logo
Melbourne Bioinformatics
Logo
ELIXIR Europe
Logo
ABRomics
Logo
Avans
Logo
BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
Logo
The University of Melbourne
Logo
DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
Logo
ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075