one-health

Tutorials covering one-health

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Computational Chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Contributors

This material was contributed to by:

orcid logoTomas Klingström avatar Tomas Klingströmorcid logoMiaomiao Zhou avatar Miaomiao ZhouGalo A. Goig avatar Galo A. Goigorcid logoWolfgang Maier avatar Wolfgang MaierChristoph Stritt avatar Christoph Strittorcid logoHelena Rasche avatar Helena Rascheorcid logoLucille Delisle avatar Lucille Delisleorcid logoDave Clements avatar Dave Clementsorcid logoAnthony Bretaudeau avatar Anthony BretaudeauDaniela Brites avatar Daniela BritesThoba Lose avatar Thoba Loseorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoBjörn Grüning avatar Björn Grüningorcid logoDaniel Blankenberg avatar Daniel BlankenbergSimon Bray avatar Simon Brayorcid logoLinelle Abueg avatar Linelle AbuegBazante Sanders avatar Bazante Sandersorcid logoSimon Gladman avatar Simon Gladmanorcid logoMarius van den Beek avatar Marius van den BeekJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoCristóbal Gallardo avatar Cristóbal GallardoAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoTeresa Müller avatar Teresa Müllerorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoMélanie Pétéra avatar Mélanie Pétéraorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
The University of Melbourne
Logo
ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
Logo
Melbourne Bioinformatics
Logo
BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
Logo
Australian BioCommons
Logo
ABRomics
Logo
DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
Logo
ELIXIR Europe
Logo
Avans