one-health

Tutorials covering one-health

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Computational chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy tuberculosis
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Contributors

This material was contributed to by:

Simon Bray avatar Simon BrayAnton Nekrutenko avatar Anton Nekrutenkoorcid logoBérénice Batut avatar Bérénice BatutDaniela Brites avatar Daniela Britesorcid logoNicola Soranzo avatar Nicola SoranzoChristoph Stritt avatar Christoph Strittorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoMarius van den Beek avatar Marius van den BeekThoba Lose avatar Thoba Loseorcid logoTomas Klingström avatar Tomas Klingströmorcid logoLinelle Abueg avatar Linelle Abuegorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn Grüningorcid logoSimon Gladman avatar Simon Gladmanorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoDeepti Varshney avatar Deepti VarshneyJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTeresa Müller avatar Teresa Müllerorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoLucille Delisle avatar Lucille DelisleBazante Sanders avatar Bazante Sandersorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDave Clements avatar Dave Clementsorcid logoWolfgang Maier avatar Wolfgang MaierGalo A. Goig avatar Galo A. Goigorcid logoTristan Reynolds avatar Tristan ReynoldsMélanie Petera avatar Mélanie Petera

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR-CONVERGE
ELIXIR CONVERGE is connecting and align ELIXIR Nodes to deliver sustainable FAIR life-science data management services. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement № 871075
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Australian BioCommons
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DEFEND
DEFEND is Addressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe. This work has received funding from the DEFEND project (www.defend2020.eu) with funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 773701.
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ELIXIR Europe
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Melbourne Bioinformatics
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Avans
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ABRomics
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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The University of Melbourne