data-science

Tutorials covering data-science

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Python
Python - Math
R basics in Galaxy
interactive-tools R
Advanced Python
Advanced R in Galaxy
R
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Python - Functions
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Plotting in Python
Python - Basic Types & Type Conversion
dplyr & tidyverse for data processing
R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json
Python - Lists & Strings & Dictionaries
Python - Flow Control
Python - Loops
Python - Files & CSV
Python - Try & Except
Python - Introductory Graduation
Conda Environments For Software Development
conda jupyter-notebook
Python - Argparse
Python - Testing
Python - Type annotations
Virtual Environments For Software Development
Python - Globbing
Python - Subprocess
Python - Coding Style
Python - Multiprocessing
Advanced CLI in Galaxy
bash jupyter-notebook
Advanced SQL
SQL jupyter-notebook
Basics of using Git from the Command Line
CLI Educational Game - Bashcrawl
game bash jupyter-notebook
CLI basics
bash jupyter-notebook
Data Manipulation Olympics
cyoa galaxy-intro
Introduction to SQL
SQL jupyter-notebook
Make & Snakemake
One protein along the UniProt page
deutsch español italiano
SQL Educational Game - Murder Mystery
game SQL jupyter-notebook
SQL with Python
SQL Python jupyter-notebook
SQL with R
SQL R rmarkdown-notebook jupyter-notebook
Variant Calling Workflow
Version Control with Git

Contributors

This material was contributed to by:

orcid logoLisanna Paladin avatar Lisanna PaladinWandrille Duchemin avatar Wandrille Ducheminorcid logoMarius van den Beek avatar Marius van den BeekMateusz Kuzak avatar Mateusz Kuzakorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoSimon Gladman avatar Simon Gladmanorcid logoCristóbal Gallardo avatar Cristóbal GallardoDonny Vrins avatar Donny Vrinsorcid logoSofoklis Keisaris avatar Sofoklis Keisarisorcid logoToby Hodges avatar Toby Hodgesorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoNate Coraor avatar Nate CoraorBazante Sanders avatar Bazante Sandersorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoMaria Christina Maniou avatar Maria Christina Maniouorcid logoMartin Čech avatar Martin Čechorcid logoTeresa Müller avatar Teresa MüllerNU Knight Lab avatar NU Knight LabYongbin Li avatar Yongbin Liorcid logoBérénice Batut avatar Bérénice BatutScott Cain avatar Scott CainAnton Nekrutenko avatar Anton Nekrutenkoorcid logoBjörn Grüning avatar Björn Grüningorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena Rascheorcid logoWendi Bacon avatar Wendi Bacon

Funding

These individuals or organisations provided funding support for the development of this resource

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Avans
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The Carpentries
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BioNT
Co-funded by the European Union
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.