data-science

Tutorials covering data-science

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Python
Python - Math
R basics in Galaxy
interactive-tools R
Advanced Python
Advanced R in Galaxy
R
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Python - Functions
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Plotting in Python
Python - Basic Types & Type Conversion
dplyr & tidyverse for data processing
R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json
Python - Lists & Strings & Dictionaries
Python - Flow Control
Python - Loops
Python - Files & CSV
Python - Try & Except
Python - Introductory Graduation
Conda Environments For Software Development
conda jupyter-notebook
Python - Argparse
Python - Testing
Python - Type annotations
Virtual Environments For Software Development
Python - Globbing
Python - Subprocess
Python - Coding Style
Python - Multiprocessing
Advanced CLI in Galaxy
bash jupyter-notebook
Advanced SQL
SQL jupyter-notebook
Basics of using Git from the Command Line
CLI Educational Game - Bashcrawl
game bash jupyter-notebook
CLI basics
bash jupyter-notebook
Data Manipulation Olympics
cyoa galaxy-intro
Introduction to SQL
SQL jupyter-notebook
Make & Snakemake
One protein along the UniProt page
deutsch español italiano
SQL Educational Game - Murder Mystery
game SQL jupyter-notebook
SQL with Python
SQL Python jupyter-notebook
SQL with R
SQL R rmarkdown-notebook jupyter-notebook
Variant Calling Workflow
Version Control with Git

Contributors

This material was contributed to by:

orcid logoLisanna Paladin avatar Lisanna PaladinMateusz Kuzak avatar Mateusz KuzakNU Knight Lab avatar NU Knight LabMaria Christina Maniou avatar Maria Christina Maniouorcid logoWendi Bacon avatar Wendi BaconBazante Sanders avatar Bazante Sandersorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal GallardoDonny Vrins avatar Donny Vrinsorcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoAnthony Bretaudeau avatar Anthony BretaudeauYongbin Li avatar Yongbin Liorcid logoBérénice Batut avatar Bérénice Batutorcid logoSofoklis Keisaris avatar Sofoklis Keisarisorcid logoToby Hodges avatar Toby Hodgesorcid logoHelena Rasche avatar Helena RascheScott Cain avatar Scott Cainorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoAnton Nekrutenko avatar Anton Nekrutenkoorcid logoPeter van Heusden avatar Peter van HeusdenWandrille Duchemin avatar Wandrille Ducheminorcid logoMarius van den Beek avatar Marius van den Beekorcid logoMartin Čech avatar Martin Čechorcid logoTeresa Müller avatar Teresa Müllerorcid logoSimon Gladman avatar Simon Gladmanorcid logoBjörn Grüning avatar Björn Grüningorcid logoNate Coraor avatar Nate Coraor

Funding

These individuals or organisations provided funding support for the development of this resource

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Avans
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The Carpentries
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BioNT
Co-funded by the European Union