data-science

Tutorials covering data-science

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Python
Python - Math
R basics in Galaxy
interactive-tools R
Advanced Python
Advanced R in Galaxy
R
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Python - Functions
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Plotting in Python
Python - Basic Types & Type Conversion
dplyr & tidyverse for data processing
R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json
Python - Lists & Strings & Dictionaries
Python - Flow Control
Python - Loops
Python - Files & CSV
Python - Try & Except
Python - Introductory Graduation
Conda Environments For Software Development
conda jupyter-notebook
Python - Argparse
Python - Testing
Python - Type annotations
Virtual Environments For Software Development
Python - Globbing
Python - Subprocess
Python - Coding Style
Python - Multiprocessing
Advanced CLI in Galaxy
bash jupyter-notebook
Advanced SQL
SQL jupyter-notebook
Basics of using Git from the Command Line
CLI Educational Game - Bashcrawl
game bash jupyter-notebook
CLI basics
bash jupyter-notebook
Data Manipulation Olympics
cyoa galaxy-intro
Introduction to SQL
SQL jupyter-notebook
Make & Snakemake
One protein along the UniProt page
deutsch español italiano
SQL Educational Game - Murder Mystery
game SQL jupyter-notebook
SQL with Python
SQL Python jupyter-notebook
SQL with R
SQL R rmarkdown-notebook jupyter-notebook
Variant Calling Workflow
Version Control with Git

Contributors

This material was contributed to by:

orcid logoFotis E. Psomopoulos avatar Fotis E. Psomopoulosorcid logoHelena Rasche avatar Helena Rascheorcid logoMartin Čech avatar Martin Čechorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoLisanna Paladin avatar Lisanna Paladinorcid logoPeter van Heusden avatar Peter van HeusdenMaria Christina Maniou avatar Maria Christina Maniouorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoSimon Gladman avatar Simon GladmanScott Cain avatar Scott Cainorcid logoTeresa Müller avatar Teresa MüllerDonny Vrins avatar Donny VrinsAnton Nekrutenko avatar Anton NekrutenkoBazante Sanders avatar Bazante SandersNU Knight Lab avatar NU Knight Laborcid logoSofoklis Keisaris avatar Sofoklis Keisarisorcid logoNate Coraor avatar Nate Coraororcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoWendi Bacon avatar Wendi Baconorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn Grüningorcid logoMarius van den Beek avatar Marius van den BeekWandrille Duchemin avatar Wandrille Ducheminorcid logoToby Hodges avatar Toby HodgesYongbin Li avatar Yongbin LiMateusz Kuzak avatar Mateusz Kuzak

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BioNT
Co-funded by the European Union
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The Carpentries
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Avans