data-science

Tutorials covering data-science

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Advanced CLI in Galaxy
bash jupyter-notebook
Advanced SQL
SQL jupyter-notebook
Basics of using Git from the Command Line
CLI Educational Game - Bashcrawl
game bash jupyter-notebook
CLI basics
bash jupyter-notebook
Data Manipulation Olympics
cyoa
Introduction to Python
Introduction to SQL
SQL jupyter-notebook
Make & Snakemake
One protein along the UniProt page
deutsch español italiano
Python - Math
R basics in Galaxy
interactive-tools R
SQL Educational Game - Murder Mystery
game SQL jupyter-notebook
SQL with Python
SQL Python jupyter-notebook
SQL with R
SQL R rmarkdown-notebook jupyter-notebook
Variant Calling Workflow
Version Control with Git
Advanced Python
Advanced R in Galaxy
R
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Python - Functions
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Plotting in Python
Python - Basic Types & Type Conversion
dplyr & tidyverse for data processing
R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json
Python - Lists & Strings & Dictionaries
Python - Flow Control
Python - Loops
Python - Files & CSV
Python - Try & Except
Python - Introductory Graduation
Conda Environments For Software Development
conda jupyter-notebook
Python - Argparse
Python - Testing
Python - Type annotations
Virtual Environments For Software Development
Python - Globbing
Python - Subprocess
Python - Coding Style
Python - Multiprocessing

Contributors

This material was contributed to by:

orcid logoFotis E. Psomopoulos avatar Fotis E. PsomopoulosMateusz Kuzak avatar Mateusz Kuzakorcid logoPeter van Heusden avatar Peter van HeusdenBazante Sanders avatar Bazante Sandersorcid logoWendi Bacon avatar Wendi Baconorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoToby Hodges avatar Toby Hodgesorcid logoHelena Rasche avatar Helena Rascheorcid logoLisanna Paladin avatar Lisanna PaladinWandrille Duchemin avatar Wandrille Ducheminorcid logoMartin Čech avatar Martin Čechorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-SolanoScott Cain avatar Scott CainYongbin Li avatar Yongbin LiMaria Christina Maniou avatar Maria Christina ManiouAnton Nekrutenko avatar Anton Nekrutenkoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoSofoklis Keisaris avatar Sofoklis Keisarisorcid logoTeresa Müller avatar Teresa MüllerMarius van den Beek avatar Marius van den Beekorcid logoSimon Gladman avatar Simon GladmanDonny Vrins avatar Donny VrinsNU Knight Lab avatar NU Knight Laborcid logoNate Coraor avatar Nate Coraororcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn Grüning

Funding

These individuals or organisations provided funding support for the development of this resource

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The Carpentries
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BioNT
Co-funded by the European Union
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Avans
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.