Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Essential genes detection with Transposon insertion sequencing |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Comparative gene analysis in unannotated genomes |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Hélène Chiapello
Deepti Varshney
Maria Doyle
Anton Nekrutenko
Erwan Corre
Mateo Boudet
Ekaterina Polkh
Cristóbal Gallardo
Teresa Müller
Anthony Bretaudeau
Romane LIBOUBAN
Kenji Fujihara
Bérénice Batut
Felicitas Kindel
Gildas Le Corguillé
Bazante Sanders
Valentin Loux
William Durand
Björn Grüning
Jasper Ouwerkerk
Niall Beard
Twishi Gulati
Miaomiao Zhou
Saskia Hiltemann
Laura Leroi
Simon Gladman
Helena Rasche
Anika Erxleben
Guillaume Gautreau
Alexandre Cormier
Torsten Seemann
Nathan Dunn
Delphine Lariviere
Nicola Soranzo
Esteban Perez-Wohlfeil
Stéphanie Robin
Simon Bray
Jonathan Kreplak
Paul Zierep
Anna Syme
Funding
These individuals or organisations provided funding support for the development of this resource
