Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Miaomiao Zhou

Valentin Loux

Erwan Corre

Hélène Chiapello

Anika Erxleben

Nicola Soranzo

Anthony Bretaudeau

Deepti Varshney

Kenji Fujihara

Jasper Ouwerkerk

Teresa Müller

Guillaume Gautreau

Jonathan Kreplak

Simon Bray

Laura Leroi

Helena Rasche

Bérénice Batut

Anna Syme

Esteban Perez-Wohlfeil

Ekaterina Polkh

Twishi Gulati

Nathan Dunn

Gildas Le Corguillé

Stéphanie Robin

Saskia Hiltemann

Cristóbal Gallardo

Alexandre Cormier

Simon Gladman

William Durand

Niall Beard

Torsten Seemann

Paul Zierep

Romane LIBOUBAN

Delphine Lariviere

Anton Nekrutenko

Björn Grüning

Mateo Boudet

Maria Doyle

Bazante Sanders

Felicitas Kindel

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

IFB

ABRomics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.