Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Jasper Ouwerkerk

Deepti Varshney

Helena Rasche

Ekaterina Polkh

William Durand

Paul Zierep

Anton Nekrutenko

Teresa Müller

Björn Grüning

Bazante Sanders

Nicola Soranzo

Saskia Hiltemann

Nathan Dunn

Cristóbal Gallardo

Felicitas Kindel

Gildas Le Corguillé

Jonathan Kreplak

Twishi Gulati

Esteban Perez-Wohlfeil

Niall Beard

Simon Bray

Torsten Seemann

Simon Gladman

Delphine Lariviere

Stéphanie Robin

Mateo Boudet

Kenji Fujihara

Miaomiao Zhou

Bérénice Batut

Anna Syme

Maria Doyle

Romane LIBOUBAN

Laura Leroi

Alexandre Cormier

Anika Erxleben

Erwan Corre

Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

IFB