Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
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Introduction to Genome Annotation
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Prokaryotes
Annotation of prokaryotic genomes.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Bacterial Genome Annotation | |||||
| Genome annotation with Prokka | |||||
| Identification of AMR genes in an assembled bacterial genome | |||||
| Refining Genome Annotations with Apollo (prokaryotes) | |||||
| Essential genes detection with Transposon insertion sequencing |
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison | |||||
| Comparative gene analysis in unannotated genomes |
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Contributors
This material was contributed to by:
Simon Gladman
Felicitas Kindel
Erwan Corre
Simon Bray
Laura Leroi
Nathan Dunn
Bazante Sanders
Miaomiao Zhou
Jonathan Kreplak
Anthony Bretaudeau
Alexandre Cormier
Teresa Müller
Esteban Perez-Wohlfeil
Niall Beard
Delphine Lariviere
Maria Doyle
Mateo Boudet
Cristóbal Gallardo
Jasper Ouwerkerk
Stéphanie Robin
Anton Nekrutenko
Anna Syme
Gildas Le Corguillé
Anika Erxleben
Nicola Soranzo
Twishi Gulati
Torsten Seemann
William Durand
Ekaterina Polkh
Helena Rasche
Björn Grüning
Kenji Fujihara
Paul Zierep
Romane LIBOUBAN
Bérénice Batut
Saskia Hiltemann
Deepti Varshney
Funding
These individuals or organisations provided funding support for the development of this resource
