Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

Material

Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson	Slides	Hands-on
Getting data into Galaxy	plain text Toggle Dropdown English Français 日本語 Español Português العربية And more! Plain text slides
Rule Based Uploader Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Rule Based Uploader: Advanced Advanced		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis	plain text Toggle Dropdown English Français 日本語 Español Português العربية And more! Plain text slides	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Galaxy Features

Learn how to use Galaxy efficiently

Lesson	Slides	Hands-on	Galaxy instances
Extracting Workflows from Histories		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Searching Your History Introductory		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Understanding Galaxy history system		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Making Data Manageable

Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

Lesson	Slides	Hands-on	Galaxy instances
Group tags for complex experimental designs		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Multisample Analysis Advanced		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Name tags for following complex histories		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Using dataset collections Intermediate		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Analysing Data

Some advanced topics in data analyis.

Lesson	Hands-on	Galaxy instances
Automating Galaxy workflows using the command line	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!	instances Galaxy Africa Galaxy India Galaxy@GenOuest Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.fr UseGalaxy.org (Main) UseGalaxy.org.au
Creating, Editing and Importing Galaxy Workflows Intermediate	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy India Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics Migale NanoGalaxy PepSimili Plant Anaylsis Workbench ProteoRE Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.fr UseGalaxy.no UseGalaxy.org (Main) UseGalaxy.org.au Virology
InterMine integration with Galaxy	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy India Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics NanoGalaxy Plant Anaylsis Workbench Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.no UseGalaxy.org (Main) UseGalaxy.org.au Virology
JupyterLab in Galaxy	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
RStudio in Galaxy	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Use Jupyter notebooks in Galaxy	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!
Using Workflow Parameters Intermediate	tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy India Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics Migale NanoGalaxy PepSimili Plant Anaylsis Workbench ProteoRE Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.fr UseGalaxy.no UseGalaxy.org (Main) UseGalaxy.org.au Virology

Download and free up space

Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

Lesson	Slides	Hands-on	Galaxy instances
Downloading and Deleting Data in Galaxy Introductory		tutorial Toggle Dropdown Automatic translations Français 日本語 Español Português العربية And more!

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.