Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

Material

Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson	Slides	Hands-on
Getting data into Galaxy	slides Toggle Dropdown Français 日本語 Español Português العربية And more!
Rule Based Uploader level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Rule Based Uploader: Advanced level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!

Galaxy Features

Learn how to use Galaxy efficiently

Lesson	Slides	Hands-on	Galaxy instances
Extracting Workflows from Histories		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Searching Your History level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Understanding Galaxy history system		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!

Making Data Manageable

Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

Lesson	Slides	Hands-on	Galaxy instances
Group tags for complex experimental designs		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Multisample Analysis level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Name tags for following complex histories		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Using dataset collections level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!

Analysing Data

Some advanced topics in data analyis.

Lesson	Hands-on	Galaxy instances
Creating, Editing and Importing Galaxy Workflows level level level	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics Migale NanoGalaxy PepSimili Plant Anaylsis Workbench ProteoRE Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.fr UseGalaxy.no UseGalaxy.org (Main) UseGalaxy.org.au Virology
InterMine integration with Galaxy	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics NanoGalaxy Plant Anaylsis Workbench Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.no UseGalaxy.org (Main) Virology
JupyterLab in Galaxy	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
RStudio in Galaxy	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Use Jupyter notebooks in Galaxy	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!
Using Workflow Parameters level level level	tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!	instances CLIP-Explorer ChemicalToolbox Climate Science Workbench Galaxy Africa Galaxy Test Galaxy for Ecology Galaxy@GenOuest HiCExplorer Human Cell Atlas Machine Learning Workbench Metabolomics Metagenomics Migale NanoGalaxy PepSimili Plant Anaylsis Workbench ProteoRE Single Cell Omics workbench Street Science UseGalaxy.be UseGalaxy.eu UseGalaxy.fr UseGalaxy.no UseGalaxy.org (Main) UseGalaxy.org.au Virology

Download and free up space

Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

Lesson	Slides	Hands-on	Galaxy instances
Downloading and Deleting Data in Galaxy level level level		tutorial Toggle Dropdown Français 日本語 Español Português العربية And more!

Other

Assorted other tutorials

Lesson	Slides	Hands-on	Galaxy instances

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.