Using Galaxy and Managing your Data

A collection of microtutorials explaining various features of the Galaxy user interface and manipulating data within Galaxy.

Material

Uploading Data

These tutorials will help you get data into Galaxy, before you analyse it.

Lesson Slides Hands-on Galaxy instances
Getting data into Galaxy
Rule Based Uploader
Rule Based Uploader: Advanced

Galaxy Features

Learn how to use Galaxy efficiently

Lesson Slides Hands-on Galaxy instances
Extracting Workflows from Histories
Searching Your History
Understanding Galaxy history system

Making Data Manageable

Now that you have data in Galaxy, let's make it easier to work with through collections and structured data.

Lesson Slides Hands-on Galaxy instances
Group tags for complex experimental designs
Multisample Analysis
Name tags for following complex histories
Using dataset collections

Analysing Data

Some advanced topics in data analyis.

Lesson Slides Hands-on Galaxy instances
Creating, Editing and Importing Galaxy Workflows
InterMine integration with Galaxy
JupyterLab in Galaxy
RStudio in Galaxy
Use Jupyter notebooks in Galaxy
Using Workflow Parameters

Download and Export

Once you are done with your analyses in Galaxy, it's time to download your data and free up space.

Lesson Slides Hands-on Galaxy instances
Downloading and Deleting Data in Galaxy

Other


Assorted other tutorials

Lesson Slides Hands-on Galaxy instances

Maintainers

This material is maintained by:

Jennifer Hillman-JacksonJennifer Hillman-Jackson Helena RascheHelena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Marius van den BeekMarius van den Beek Simon GladmanSimon Gladman Helena RascheHelena Rasche Dave ClementsDave Clements Anne PajonAnne Pajon Maria DoyleMaria Doyle Saskia HiltemannSaskia Hiltemann Daniela ButanoDaniela Butano Yo YehudiYo Yehudi Anne FouillouxAnne Fouilloux Anton NekrutenkoAnton Nekrutenko Bérénice BatutBérénice Batut Fotis E. PsomopoulosFotis E. Psomopoulos Toby HodgesToby Hodges John ChiltonJohn Chilton Martin ČechMartin Čech Delphine LariviereDelphine Lariviere