Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
    • Galaxy Code Architecture
    Writing Automated Tests for Galaxy

    API

    Interacting with the Galaxy API

    Lesson Slides Hands-on Recordings
    Contributing to BioBlend as a developer
    Scripting Galaxy using the API and BioBlend
    jupyter-notebook

    Dependencies

    These topics include information on how dependencies work in Galaxy and how to construct them.

    Lesson Slides Hands-on Recordings
    Prerequisites for building software/conda packages
    Tool Dependencies and Conda
    Tool Dependencies and Containers

    Tool Development

    Here you can learn everything about tool development in the Galaxy Ecosystem

    Lesson Slides Hands-on Recordings
    Creating Galaxy tools from Conda Through Deployment
    • Galaxy Interactive Tools
    Tool Shed: sharing Galaxy tools
    Tool development and integration into Galaxy
    ToolFactory: Generating Tools From More Complex Scripts
    • ToolFactory: Generating Tools From Simple Scripts

    • Viz

    Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

    Lesson Slides Hands-on Recordings
    Generic plugins
    JavaScript plugins

    Advanced Features

    These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

    Lesson Slides Hands-on Recordings
    Data source integration
    Galaxy Interactive Tours
    Galaxy Webhooks

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

    Maintainers

    This material is maintained by:

    AvatarGildas Le Corguilléorcid logoAvatarBérénice Batutorcid logoAvatarHelena Rasche

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.

    Contributors

    This material was contributed to by:

    AvatarClare Sloggettorcid logoAvatarNicola Soranzoorcid logoAvatarYvan Le BrasAvatarStéphanie LegrasAvatarAlex OstrovskyAvatarNitesh TuragaAvatarYouri HoogstrateAvatarHervé MénagerAvatarAysam Guerlerorcid logoAvatarJohn Davisorcid logoAvatarCameron HydeAvatarLain PavotAvatarDave B.AvatarEstelle AnceletAvatarMartin Čechorcid logoAvatarGianmauro Cuccuruorcid logoAvatarJohn ChiltonAvatarCyril MonjeaudAvatarErik SchillAvatarDannon BakerAvatarSimon BrayAvatarLoraine GuéguenAvatarClemens Blankorcid logoAvatarHelena RascheAvatarMatthias Berntorcid logoAvatarSaskia Hiltemannorcid logoAvatarBjörn Grüningorcid logoAvatarBérénice BatutAvatarGildas Le Corguilléorcid logoAvatarAnthony BretaudeauAvatarAssunta DeSantoAvatarRoss Lazarus