Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguillé orcid logoBérénice Batut avatar Bérénice Batut orcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

orcid logoSaskia Hiltemann avatar Saskia Hiltemann orcid logoAlex Ostrovsky avatar Alex Ostrovsky Youri Hoogstrate avatar Youri Hoogstrate Loraine Guéguen avatar Loraine Guéguen orcid logoPaul Zierep avatar Paul Zierep Clare Sloggett avatar Clare Sloggett orcid logoSimon Gladman avatar Simon Gladman Niall Beard avatar Niall Beard Nitesh Turaga avatar Nitesh Turaga orcid logoYvan Le Bras avatar Yvan Le Bras orcid logoJohn Davis avatar John Davis orcid logoGianmauro Cuccuru avatar Gianmauro Cuccuru orcid logoWendi Bacon avatar Wendi Bacon Erik Schill avatar Erik Schill Cyril Monjeaud avatar Cyril Monjeaud Marie Josse avatar Marie Josse orcid logoNicola Soranzo avatar Nicola Soranzo Ross Lazarus avatar Ross Lazarus David López avatar David López Assunta DeSanto avatar Assunta DeSanto William Durand avatar William Durand Lain Pavot avatar Lain Pavot orcid logoNate Coraor avatar Nate Coraor Tunc Kayikcioglu avatar Tunc Kayikcioglu orcid logoHelena Rasche avatar Helena Rasche orcid logoAnthony Bretaudeau avatar Anthony Bretaudeau Stéphanie Legras avatar Stéphanie Legras orcid logoBérénice Batut avatar Bérénice Batut orcid logoJohn Chilton avatar John Chilton orcid logoClemens Blank avatar Clemens Blank Marius van den Beek avatar Marius van den Beek orcid logoMartin Čech avatar Martin Čech orcid logoBjörn Grüning avatar Björn Grüning Hervé Ménager avatar Hervé Ménager orcid logoCameron Hyde avatar Cameron Hyde Matthias Bernt avatar Matthias Bernt Dannon Baker avatar Dannon Baker Dave B. avatar Dave B. Aysam Guerler avatar Aysam Guerler Simon Bray avatar Simon Bray orcid logoCristóbal Gallardo avatar Cristóbal Gallardo Oleg Zharkov avatar Oleg Zharkov orcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solano Estelle Ancelet avatar Estelle Ancelet Gildas Le Corguillé avatar Gildas Le Corguillé orcid logoJohan Gustafsson avatar Johan Gustafsson

Funding

These individuals or organisations provided funding support for the development of this resource