Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Galaxy Code Architecture
Debugging Galaxy
    • Contributing a New Feature to Galaxy Core
    Writing Automated Tests for Galaxy

    API

    Interacting with the Galaxy API

    Lesson Slides Hands-on Recordings
    Scripting Galaxy using the API and BioBlend
    jupyter-notebook
    Contributing to BioBlend as a developer

    Dependencies

    These topics include information on how dependencies work in Galaxy and how to construct them.

    Lesson Slides Hands-on Recordings
    Tool Dependencies and Containers
    Tool Dependencies and Conda
    Prerequisites for building software/conda packages

    Tool Development

    Here you can learn everything about tool development in the Galaxy Ecosystem

    Lesson Slides Hands-on Recordings
    Tool Shed: sharing Galaxy tools
    Tool development and integration into Galaxy
    ToolFactory: Generating Tools From Simple Scripts
    • ToolFactory: Generating Tools From More Complex Scripts
    • Galaxy Interactive Tools
    Creating Galaxy tools from Conda Through Deployment

    • Viz

    Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

    Lesson Slides Hands-on Recordings
    JavaScript plugins
    Generic plugins

    Advanced Features

    These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

    Lesson Slides Hands-on Recordings
    Galaxy Webhooks
    Galaxy Interactive Tours
    Data source integration

    Frequently Asked Questions

    Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

    Maintainers

    This material is maintained by:

    AvatarGildas Le Corguilléorcid logoAvatarBérénice Batutorcid logoAvatarHelena Rasche

    For any question related to this topic and the content, you can contact them or visit our Gitter channel.

    Contributors

    This material was contributed to by:

    AvatarDave B.orcid logoAvatarJohn ChiltonAvatarYouri Hoogstrateorcid logoAvatarAnthony BretaudeauAvatarEstelle Anceletorcid logoAvatarBjörn Grüningorcid logoAvatarBérénice BatutAvatarStéphanie LegrasAvatarNitesh TuragaAvatarGildas Le CorguilléAvatarSimon BrayAvatarCyril MonjeaudAvatarDannon Bakerorcid logoAvatarJohn DavisAvatarMartin ČechAvatarClemens Blankorcid logoAvatarSaskia HiltemannAvatarAlex OstrovskyAvatarLoraine GuéguenAvatarClare SloggettAvatarMatthias BerntAvatarErik Schillorcid logoAvatarHelena RascheAvatarHervé MénagerAvatarAssunta DeSantoAvatarLain Pavotorcid logoAvatarYvan Le BrasAvatarAysam GuerlerAvatarRoss Lazarusorcid logoAvatarNicola Soranzoorcid logoAvatarGianmauro Cuccuruorcid logoAvatarCameron Hyde