plants
Tutorials covering plants
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Contributors
This material was contributed to by:
Deepti Varshney
Wendi Bacon
Kevin Frey
Fabian Recktenwald
Anna Syme
Cristina Martins Rodrigues
Dominik Brilhaus
Sabrina Zander
Björn Grüning
Delphine Lariviere
Martin Kuhl
Esteban Perez-Wohlfeil
Cristóbal Gallardo
Beatriz Serrano-Solano
Pavankumar Videm
Helena Rasche
Bérénice Batut
Anthony Bretaudeau
Saskia Hiltemann
Stella Eggels
Teresa Müller
Tom Brown
Mehmet Tekman
Funding
These individuals or organisations provided funding support for the development of this resource
