plants
Tutorials covering plants
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Contributors
This material was contributed to by:
Tom Brown
Mehmet Tekman
Stella Eggels
Helena Rasche
Sabrina Zander
Esteban Perez-Wohlfeil
Cristóbal Gallardo
Martin Kuhl
Pavankumar Videm
Dominik Brilhaus
Anthony Bretaudeau
Kevin Frey
Saskia Hiltemann
Bérénice Batut
Teresa Müller
Deepti Varshney
Delphine Lariviere
Anna Syme
Wendi Bacon
Cristina Martins Rodrigues
Björn Grüning
Beatriz Serrano-Solano
Fabian Recktenwald
Funding
These individuals or organisations provided funding support for the development of this resource
