plants
Tutorials covering plants
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Contributors
This material was contributed to by:
Pavankumar Videm
Björn Grüning
Cristina Martins Rodrigues
Wendi Bacon
Anthony Bretaudeau
Cristóbal Gallardo
Deepti Varshney
Esteban Perez-Wohlfeil
Dominik Brilhaus
Fabian Recktenwald
Kevin Frey
Stella Eggels
Anna Syme
Tom Brown
Delphine Lariviere
Bérénice Batut
Saskia Hiltemann
Martin Kuhl
Beatriz Serrano-Solano
Sabrina Zander
Teresa Müller
Helena Rasche
Mehmet Tekman
Funding
These individuals or organisations provided funding support for the development of this resource
