plants
Tutorials covering plants
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| ERGA post-assembly QC | |||||
| Large genome assembly and polishing |
FAIR Data, Workflows, and Research
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| DataPLANT ARCs |
Genome Annotation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| From small to large-scale genome comparison |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data |
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants | |||||
| NCBI BLAST+ against the MAdLand |
Single Cell
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Whole transcriptome analysis of Arabidopsis thaliana |
Contributors
This material was contributed to by:
Martin Kuhl
Fabian Recktenwald
Wendi Bacon
Cristóbal Gallardo
Esteban Perez-Wohlfeil
Anna Syme
Beatriz Serrano-Solano
Delphine Lariviere
Kevin Frey
Sabrina Zander
Mehmet Tekman
Saskia Hiltemann
Tom Brown
Helena Rasche
Björn Grüning
Cristina Martins Rodrigues
Pavankumar Videm
Deepti Varshney
Dominik Brilhaus
Teresa Müller
Stella Eggels
Funding
These individuals or organisations provided funding support for the development of this resource
