plants

Tutorials covering plants

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Chloroplast genome assembly
ERGA post-assembly QC
Large genome assembly and polishing

FAIR Data, Workflows, and Research

Lesson Slides Hands-on Recordings Input dataset Workflows
DataPLANT ARCs

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
From small to large-scale genome comparison

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
NCBI BLAST+ against the MAdLand

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Analysis of plant scRNA-Seq Data with Scanpy

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Whole transcriptome analysis of Arabidopsis thaliana

Contributors

This material was contributed to by:

orcid logoMartin Kuhl avatar Martin Kuhlorcid logoBjörn Grüning avatar Björn Grüningorcid logoAnna Syme avatar Anna Symeorcid logoKevin Frey avatar Kevin Freyorcid logoDelphine Lariviere avatar Delphine LariviereMehmet Tekman avatar Mehmet Tekmanorcid logoWendi Bacon avatar Wendi Baconorcid logoTom Brown avatar Tom Brownorcid logoSaskia Hiltemann avatar Saskia HiltemannStella Eggels avatar Stella Eggelsorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoCristina Martins Rodrigues avatar Cristina Martins RodriguesDeepti Varshney avatar Deepti Varshneyorcid logoSabrina Zander avatar Sabrina Zanderorcid logoHelena Rasche avatar Helena RascheEsteban Perez-Wohlfeil avatar Esteban Perez-Wohlfeilorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDominik Brilhaus avatar Dominik BrilhausFabian Recktenwald avatar Fabian Recktenwaldorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solano

Funding

These individuals or organisations provided funding support for the development of this resource