jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Björn Grüning
Natalie Kucher
Delphine Lariviere
Nathan Dunn
Teresa Müller
Niall Beard
Anton Nekrutenko
Simon Gladman
Cristóbal Gallardo
Stéphanie Robin
Tristan Reynolds
Frederick Tan
Simon Bray
Alexandre Cormier
Miaomiao Zhou
Bazante Sanders
Bérénice Batut
Katherine Cox
Erwan Corre
Peter van Heusden
Deepti Varshney
Felicitas Kindel
Laura Leroi
Anna Syme
Nicola Soranzo
Ava Hoffman
Robert Meller
Saskia Hiltemann
Romane LIBOUBAN
Jennifer Hillman-Jackson
Elizabeth Humphries
Torsten Seemann
Helena Rasche
Candace Savonen
Mateo Boudet
Maria Doyle
Anthony Bretaudeau
Paul Zierep
Jasper Ouwerkerk
Jonathan Kreplak
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
Avans
The University of Melbourne
Melbourne Bioinformatics
ELIXIR Europe
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
NHGRI GDS Community Network
NHGRI ANVIL
IFB