jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Stéphanie Robin
Helena Rasche
Cristóbal Gallardo
Jonathan Kreplak
Björn Grüning
Jasper Ouwerkerk
Niall Beard
Miaomiao Zhou
Felicitas Kindel
Mateo Boudet
Elizabeth Humphries
Teresa Müller
Anna Syme
Ava Hoffman
Tristan Reynolds
Simon Gladman
Torsten Seemann
Maria Doyle
Alexandre Cormier
Natalie Kucher
Deepti Varshney
Nicola Soranzo
Anthony Bretaudeau
Bérénice Batut
Frederick Tan
Jennifer Hillman-Jackson
Katherine Cox
Paul Zierep
Robert Meller
Anton Nekrutenko
Simon Bray
Peter van Heusden
Erwan Corre
Saskia Hiltemann
Romane LIBOUBAN
Delphine Lariviere
Nathan Dunn
Laura Leroi
Bazante Sanders
Candace Savonen
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
ELIXIR Europe
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
The University of Melbourne
NHGRI GDS Community Network
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
NHGRI ANVIL
Melbourne Bioinformatics
Australian BioCommons
IFB
Avans