jbrowse1

Tutorials covering jbrowse1

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
Chloroplast genome assembly plants nanopore jbrowse1 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (September 2024) - 16m video Tutorial (February 2021) - 35m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (September 2024) - 16m video Tutorial (February 2021) - 35m video View All
Making sense of a newly assembled genome gmod prokaryote microgalaxy jbrowse1 tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages

Genome Annotation

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
Genome annotation with Funannotate gmod eukaryote jbrowse1 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (May 2023) - 1h10m video Tutorial (March 2022) - 1h10m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (May 2023) - 1h10m video Tutorial (March 2022) - 1h10m video View All
Genome annotation with Maker (short) gmod eukaryote maker jbrowse1 tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Genome annotation with Maker gmod eukaryote jbrowse1 maker tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Refining Genome Annotations with Apollo (eukaryotes) gmod eukaryote cyoa jbrowse1 apollo2 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Bacterial Genome Annotation gmod illumina bacteria microgalaxy jbrowse1 tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (September 2024) - 44m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (September 2024) - 44m video View All
Comparison of two annotation tools - Helixer and Braker3 eukaryota Braker3 Helixer jbrowse1 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Genome annotation with Braker3 eukaryota Braker3 jbrowse1 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Genome annotation with Helixer eukaryota helixer jbrowse1 biodiversity tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Genome annotation with Prokka gmod prokaryote microgalaxy jbrowse1 plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Lecture (February 2021) - 3m video Tutorial (February 2021) - 20m video View All	plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides	tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Lecture (February 2021) - 3m video Tutorial (February 2021) - 20m video View All
Identification of AMR genes in an assembled bacterial genome gmod illumina amr one-health jbrowse1 microgalaxy tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (September 2024) - 26m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (September 2024) - 26m video View All
Refining Genome Annotations with Apollo (prokaryotes) gmod prokaryote microgalaxy jbrowse1 biodiversity apollo2 plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Lecture (February 2021) - 5m video Tutorial (February 2021) - 1h video View All	plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides	tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Lecture (February 2021) - 5m video Tutorial (February 2021) - 1h video View All

Sequence analysis

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
SARS-CoV-2 Viral Sample Alignment and Variant Visualization covid19 gmod jbrowse1 tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages

Variant Analysis

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
Microbial Variant Calling prokaryote microgalaxy gmod jbrowse1 tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages

Visualisation

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
Genomic Data Visualisation with JBrowse gmod jbrowse1 plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides	tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages

Contributors

This material was contributed to by:

Candace Savonen

Felicitas Kindel

Jasper Ouwerkerk

Anton Nekrutenko

Romane LIBOUBAN

Jennifer Hillman-Jackson

Tristan Reynolds

Alexandre Cormier

Saskia Hiltemann

Björn Grüning

Peter van Heusden

Elizabeth Humphries

Bazante Sanders

Anthony Bretaudeau

Cristóbal Gallardo

Jonathan Kreplak

Stéphanie Robin

Torsten Seemann

Deepti Varshney

Delphine Lariviere

Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource

The University of Melbourne

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Australian BioCommons

Melbourne Bioinformatics

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

NHGRI GDS Community Network