jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Simon Gladman
Erwan Corre
Anthony Bretaudeau
Nicola Soranzo
Bérénice Batut
Candace Savonen
Maria Doyle
Laura Leroi
Katherine Cox
Elizabeth Humphries
Ava Hoffman
Felicitas Kindel
Natalie Kucher
Torsten Seemann
Saskia Hiltemann
Deepti Varshney
Robert Meller
Romane LIBOUBAN
Nathan Dunn
Björn Grüning
Miaomiao Zhou
Paul Zierep
Stéphanie Robin
Alexandre Cormier
Helena Rasche
Mateo Boudet
Frederick Tan
Simon Bray
Anna Syme
Peter van Heusden
Jasper Ouwerkerk
Teresa Müller
Cristóbal Gallardo
Bazante Sanders
Delphine Lariviere
Jennifer Hillman-Jackson
Jonathan Kreplak
Niall Beard
Anton Nekrutenko
Tristan Reynolds
Funding
These individuals or organisations provided funding support for the development of this resource
Australian BioCommons
Avans
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Melbourne Bioinformatics
ELIXIR Europe
NHGRI GDS Community Network
NHGRI ANVIL
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
The University of Melbourne
IFB