jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Teresa Müller
Niall Beard
Elizabeth Humphries
Simon Gladman
Paul Zierep
Frederick Tan
Nicola Soranzo
Natalie Kucher
Peter van Heusden
Jasper Ouwerkerk
Delphine Lariviere
Bérénice Batut
Romane LIBOUBAN
Bazante Sanders
Robert Meller
Ava Hoffman
Cristóbal Gallardo
Candace Savonen
Jonathan Kreplak
Laura Leroi
Deepti Varshney
Mateo Boudet
Björn Grüning
Katherine Cox
Jennifer Hillman-Jackson
Simon Bray
Saskia Hiltemann
Miaomiao Zhou
Tristan Reynolds
Anton Nekrutenko
Helena Rasche
Erwan Corre
Torsten Seemann
Alexandre Cormier
Stéphanie Robin
Felicitas Kindel
Maria Doyle
Anna Syme
Nathan Dunn
Anthony Bretaudeau
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
IFB
NHGRI GDS Community Network
ELIXIR Europe
NHGRI ANVIL
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
Avans
The University of Melbourne
ABRomics
Australian BioCommons