jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Jasper Ouwerkerk
Saskia Hiltemann
Anthony Bretaudeau
Tristan Reynolds
Bazante Sanders
Laura Leroi
Miaomiao Zhou
Anton Nekrutenko
Cristóbal Gallardo
Frederick Tan
Romane LIBOUBAN
Ava Hoffman
Felicitas Kindel
Stéphanie Robin
Mateo Boudet
Bérénice Batut
Niall Beard
Deepti Varshney
Helena Rasche
Katherine Cox
Björn Grüning
Erwan Corre
Nathan Dunn
Candace Savonen
Anna Syme
Jennifer Hillman-Jackson
Natalie Kucher
Maria Doyle
Elizabeth Humphries
Robert Meller
Peter van Heusden
Jonathan Kreplak
Simon Gladman
Delphine Lariviere
Torsten Seemann
Simon Bray
Alexandre Cormier
Teresa Müller
Paul Zierep
Nicola Soranzo
Funding
These individuals or organisations provided funding support for the development of this resource
Melbourne Bioinformatics
NHGRI ANVIL
Avans
IFB
Australian BioCommons
NHGRI GDS Community Network
The University of Melbourne
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ABRomics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ELIXIR Europe