jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Delphine Lariviere
Anton Nekrutenko
Nathan Dunn
Stéphanie Robin
Jonathan Kreplak
Torsten Seemann
Jennifer Hillman-Jackson
Mateo Boudet
Simon Bray
Anthony Bretaudeau
Maria Doyle
Candace Savonen
Niall Beard
Tristan Reynolds
Alexandre Cormier
Ava Hoffman
Frederick Tan
Jasper Ouwerkerk
Elizabeth Humphries
Helena Rasche
Nicola Soranzo
Natalie Kucher
Teresa Müller
Björn Grüning
Anna Syme
Robert Meller
Romane LIBOUBAN
Laura Leroi
Miaomiao Zhou
Simon Gladman
Katherine Cox
Bérénice Batut
Erwan Corre
Felicitas Kindel
Bazante Sanders
Saskia Hiltemann
Paul Zierep
Cristóbal Gallardo
Deepti Varshney
Peter van Heusden
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
ELIXIR Europe
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
NHGRI ANVIL
The University of Melbourne
Australian BioCommons
ABRomics
IFB
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
NHGRI GDS Community Network
Melbourne Bioinformatics