jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Saskia Hiltemann
Nicola Soranzo
Björn Grüning
Elizabeth Humphries
Jonathan Kreplak
Peter van Heusden
Anna Syme
Simon Bray
Anton Nekrutenko
Miaomiao Zhou
Torsten Seemann
Ava Hoffman
Paul Zierep
Alexandre Cormier
Helena Rasche
Robert Meller
Felicitas Kindel
Bérénice Batut
Bazante Sanders
Jennifer Hillman-Jackson
Katherine Cox
Candace Savonen
Cristóbal Gallardo
Simon Gladman
Deepti Varshney
Natalie Kucher
Teresa Müller
Romane LIBOUBAN
Tristan Reynolds
Jasper Ouwerkerk
Delphine Lariviere
Nathan Dunn
Erwan Corre
Mateo Boudet
Stéphanie Robin
Frederick Tan
Maria Doyle
Anthony Bretaudeau
Laura Leroi
Niall Beard
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Melbourne Bioinformatics
IFB
Australian BioCommons
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
NHGRI ANVIL
ELIXIR Europe
Avans
ABRomics
The University of Melbourne
NHGRI GDS Community Network