jbrowse1
Tutorials covering jbrowse1
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Making sense of a newly assembled genome |
Genome Annotation
Sequence analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Microbial Variant Calling |
Visualisation
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Genomic Data Visualisation with JBrowse |
Contributors
This material was contributed to by:
Jennifer Hillman-Jackson
Maria Doyle
Simon Gladman
Romane LIBOUBAN
Ava Hoffman
Simon Bray
Robert Meller
Erwan Corre
Deepti Varshney
Paul Zierep
Katherine Cox
Niall Beard
Jonathan Kreplak
Cristóbal Gallardo
Saskia Hiltemann
Laura Leroi
Delphine Lariviere
Natalie Kucher
Nathan Dunn
Alexandre Cormier
Helena Rasche
Peter van Heusden
Miaomiao Zhou
Anton Nekrutenko
Anna Syme
Bazante Sanders
Anthony Bretaudeau
Torsten Seemann
Bérénice Batut
Björn Grüning
Tristan Reynolds
Nicola Soranzo
Stéphanie Robin
Mateo Boudet
Felicitas Kindel
Elizabeth Humphries
Candace Savonen
Jasper Ouwerkerk
Teresa Müller
Frederick Tan
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
IFB
The University of Melbourne
NHGRI GDS Community Network
ELIXIR Europe
Avans
Australian BioCommons
Melbourne Bioinformatics
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
ABRomics
NHGRI ANVIL