interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling | |||||
| Visualize EBV cube data with Panoply netCDF viewer |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Hui Tang
Björn Grüning
Kaivan Kamali
Anthony Bretaudeau
Helena Rasche
Michelle Terese Savage
Elisa Michon
Marie Gramm
Dennis Lal group
Bérénice Batut
Toby Hodges
Pauline Seguineau
Tomas Klingström
Simon Gladman
Saskia Hiltemann
Mira Kuntz
Nate Coraor
Gianmauro Cuccuru
Armin Dadras
Wendi Bacon
Delphine Lariviere
Peter van Heusden
Maria Doyle
Teresa Müller
Anne Fouilloux
Anup Kumar
Daniel Blankenberg
Nicola Soranzo
Marie Josse
Marius van den Beek
Yvan Le Bras
Lucille Delisle
Martin Čech
Coline Royaux
Ankerl Yassine
Fotis E. Psomopoulos
José Manuel Domínguez
Mateusz Kuzak
Funding
These individuals or organisations provided funding support for the development of this resource
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
PNDB
UFR
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Antarctic and Southern Ocean Coalition
ELIXIR Europe
de.NBI