interactive-tools
Tutorials covering interactive-tools
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Galaxy Server administration
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Create a subdomain for your community on UseGalaxy.eu | |||||
| Galaxy Interactive Tools |
Climate
Galaxy Community Building
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Make your tools available on your subdomain |
Foundations of Data Science
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy |
Ecology
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Ecoregionalization workflow tutorial | |||||
| Species distribution modeling | |||||
| Visualize EBV cube data with Panoply netCDF viewer |
Using Galaxy and Managing your Data
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| JupyterLab in Galaxy | |||||
| RStudio in Galaxy |
Statistics and machine learning
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy | |||||
| Fine tune large protein model (ProtTrans) using HuggingFace | |||||
| Introduction to Machine Learning using R | |||||
| Text-mining with the SimText toolset |
Transcriptomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| RNA Seq Counts to Viz in R | |||||
| Visualization of RNA-Seq results with Volcano Plot in R |
Contributors
This material was contributed to by:
Anthony Bretaudeau
Helena Rasche
Hui Tang
Nate Coraor
Tomas Klingström
Lucille Delisle
Wendi Bacon
Coline Royaux
Simon Gladman
Martin Čech
Nicola Soranzo
Marie Gramm
Delphine Lariviere
Maria Doyle
Pauline Seguineau
Teresa Müller
Gianmauro Cuccuru
Ankerl Yassine
Toby Hodges
Anne Fouilloux
José Manuel Domínguez
Fotis E. Psomopoulos
Peter van Heusden
Björn Grüning
Dennis Lal group
Anup Kumar
Marius van den Beek
Mira Kuntz
Mateusz Kuzak
Yvan Le Bras
Elisa Michon
Bérénice Batut
Daniel Blankenberg
Marie Josse
Daniela Schneider
Armin Dadras
Saskia Hiltemann
Kaivan Kamali
Michelle Terese Savage
Funding
These individuals or organisations provided funding support for the development of this resource
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
PNDB
Antarctic and Southern Ocean Coalition
UFR
ELIXIR Europe
de.NBI
Fair-Ease
FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.