cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

Marius van den Beek avatar Marius van den Beekorcid logoLucille Delisle avatar Lucille DelisleWilliam Durand avatar William DurandJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoEngy Nasr avatar Engy Nasrorcid logoDeepti Varshney avatar Deepti VarshneySimon Bray avatar Simon Brayorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoBérénice Batut avatar Bérénice Batutorcid logoMaria Doyle avatar Maria Doyleorcid logoMartin Čech avatar Martin Čechorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoIacopo Cristoferi avatar Iacopo CristoferiEkaterina Polkh avatar Ekaterina Polkhorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoGraeme Tyson avatar Graeme TysonYongbin Li avatar Yongbin Liorcid logoMallory Freeberg avatar Mallory FreebergScott Cain avatar Scott Cainorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoPaul Zierep avatar Paul ZierepDonny Vrins avatar Donny VrinsMehmet Tekman avatar Mehmet Tekmanorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoMatti Hoch avatar Matti Hochorcid logoNicola Soranzo avatar Nicola SoranzoNiall Beard avatar Niall Beardorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn Grüningorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMira Kuntz avatar Mira Kuntzorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoArmin Dadras avatar Armin Dadrasorcid logoMo Heydarian avatar Mo Heydarianorcid logoClea Siguret avatar Clea Siguretorcid logoFlorian Heyl avatar Florian HeylJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoClemens Blank avatar Clemens Blankorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoLinelle Abueg avatar Linelle AbuegSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

Logo
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Logo
EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
Logo
de.NBI
Logo
BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
Logo
EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087