cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoPavankumar Videm avatar Pavankumar VidemJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMatti Hoch avatar Matti HochJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoIacopo Cristoferi avatar Iacopo Cristoferiorcid logoLucille Delisle avatar Lucille Delisleorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoClea Siguret avatar Clea SiguretNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMartin Čech avatar Martin Čechorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoPaul Zierep avatar Paul ZierepSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon Brayorcid logoBérénice Batut avatar Bérénice BatutWilliam Durand avatar William Durandorcid logoFlorian Heyl avatar Florian HeylMarius van den Beek avatar Marius van den Beekorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoArmin Dadras avatar Armin DadrasYongbin Li avatar Yongbin Liorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMo Heydarian avatar Mo HeydarianDonny Vrins avatar Donny Vrinsorcid logoBjörn Grüning avatar Björn GrüningEkaterina Polkh avatar Ekaterina Polkhorcid logoCristóbal Gallardo avatar Cristóbal GallardoMehmet Tekman avatar Mehmet Tekmanorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoClemens Blank avatar Clemens Blankorcid logoHelena Rasche avatar Helena Rascheorcid logoEngy Nasr avatar Engy Nasrorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDeepti Varshney avatar Deepti VarshneyScott Cain avatar Scott Cainorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoGraeme Tyson avatar Graeme Tysonorcid logoLinelle Abueg avatar Linelle Abuegorcid logoMaria Doyle avatar Maria Doyleorcid logoMira Kuntz avatar Mira Kuntz

Funding

These individuals or organisations provided funding support for the development of this resource

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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.