cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoMatti Hoch avatar Matti Hochorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMo Heydarian avatar Mo HeydarianSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoLinelle Abueg avatar Linelle AbuegJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoPaul Zierep avatar Paul ZierepEkaterina Polkh avatar Ekaterina Polkhorcid logoClemens Blank avatar Clemens Blankorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMaria Doyle avatar Maria Doyleorcid logoBjörn Grüning avatar Björn Grüningorcid logoPeter van Heusden avatar Peter van HeusdenDonny Vrins avatar Donny Vrinsorcid logoMyrthe van Baardwijk avatar Myrthe van BaardwijkJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia HiltemannMarius van den Beek avatar Marius van den Beekorcid logoClea Siguret avatar Clea SiguretScott Cain avatar Scott Cainorcid logoEngy Nasr avatar Engy Nasrorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMira Kuntz avatar Mira Kuntzorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoFlorian Heyl avatar Florian Heylorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMartin Čech avatar Martin ČechNiall Beard avatar Niall Beardorcid logoGraeme Tyson avatar Graeme TysonWilliam Durand avatar William DurandYongbin Li avatar Yongbin Liorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoHelena Rasche avatar Helena Rascheorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiMehmet Tekman avatar Mehmet Tekmanorcid logoLucille Delisle avatar Lucille Delisleorcid logoIacopo Cristoferi avatar Iacopo Cristoferiorcid logoArmin Dadras avatar Armin Dadras

Funding

These individuals or organisations provided funding support for the development of this resource

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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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de.NBI
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.