cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

Niall Beard avatar Niall BeardEkaterina Polkh avatar Ekaterina PolkhDonny Vrins avatar Donny Vrinsorcid logoFlorian Heyl avatar Florian Heylorcid logoMartin Čech avatar Martin Čechorcid logoLinelle Abueg avatar Linelle AbuegYongbin Li avatar Yongbin Liorcid logoEngy Nasr avatar Engy Nasrorcid logoMallory Freeberg avatar Mallory Freebergorcid logoHelena Rasche avatar Helena Rascheorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzWilliam Durand avatar William Durandorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoDeepti Varshney avatar Deepti VarshneySanjay Kumar Srikakulam avatar Sanjay Kumar SrikakulamSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoPaul Zierep avatar Paul Ziereporcid logoGraeme Tyson avatar Graeme Tysonorcid logoClemens Blank avatar Clemens Blankorcid logoClea Siguret avatar Clea Siguretorcid logoMaria Doyle avatar Maria Doyleorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoIacopo Cristoferi avatar Iacopo CristoferiJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoLucille Delisle avatar Lucille Delisleorcid logoMo Heydarian avatar Mo Heydarianorcid logoArmin Dadras avatar Armin Dadrasorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoWolfgang Maier avatar Wolfgang MaierMehmet Tekman avatar Mehmet TekmanScott Cain avatar Scott Cainorcid logoMatti Hoch avatar Matti HochMarius van den Beek avatar Marius van den Beekorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBérénice Batut avatar Bérénice Batutorcid logoMira Kuntz avatar Mira Kuntz

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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de.NBI