cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy Training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoFlorian Heyl avatar Florian Heylorcid logoDeepti Varshney avatar Deepti VarshneyNiall Beard avatar Niall Beardorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMallory Freeberg avatar Mallory Freebergorcid logoLinelle Abueg avatar Linelle AbuegWilliam Durand avatar William DurandScott Cain avatar Scott Cainorcid logoPaul Zierep avatar Paul Ziereporcid logoMatti Hoch avatar Matti HochDonny Vrins avatar Donny Vrinsorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMartin Čech avatar Martin Čechorcid logoEngy Nasr avatar Engy NasrMehmet Tekman avatar Mehmet Tekmanorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoGraeme Tyson avatar Graeme Tysonorcid logoMaria Doyle avatar Maria Doyleorcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBjörn Grüning avatar Björn Grüningorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoArmin Dadras avatar Armin DadrasSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoLucille Delisle avatar Lucille DelisleJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoIacopo Cristoferi avatar Iacopo CristoferiYongbin Li avatar Yongbin Liorcid logoMira Kuntz avatar Mira Kuntzorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMo Heydarian avatar Mo Heydarianorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoClea Siguret avatar Clea Siguretorcid logoClemens Blank avatar Clemens Blankorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiEkaterina Polkh avatar Ekaterina Polkhorcid logoMarius van den Beek avatar Marius van den Beekorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzJasper Ouwerkerk avatar Jasper Ouwerkerk

Funding

These individuals or organisations provided funding support for the development of this resource

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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.