cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

Sanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiJasper Ouwerkerk avatar Jasper OuwerkerkScott Cain avatar Scott Cainorcid logoMo Heydarian avatar Mo Heydarianorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoLucille Delisle avatar Lucille Delisleorcid logoIacopo Cristoferi avatar Iacopo Cristoferiorcid logoMaria Doyle avatar Maria Doyleorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoMatti Hoch avatar Matti HochMehmet Tekman avatar Mehmet Tekmanorcid logoPaul Zierep avatar Paul Ziereporcid logoClemens Blank avatar Clemens Blankorcid logoMartin Čech avatar Martin Čechorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon Brayorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoEngy Nasr avatar Engy NasrJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoFlorian Heyl avatar Florian Heylorcid logoBérénice Batut avatar Bérénice BatutYongbin Li avatar Yongbin Liorcid logoMallory Freeberg avatar Mallory Freebergorcid logoGraeme Tyson avatar Graeme Tysonorcid logoMira Kuntz avatar Mira KuntzDonny Vrins avatar Donny Vrinsorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoLinelle Abueg avatar Linelle Abuegorcid logoHelena Rasche avatar Helena RascheNiall Beard avatar Niall BeardMarius van den Beek avatar Marius van den Beekorcid logoMarek Ostaszewski avatar Marek OstaszewskiWilliam Durand avatar William Durandorcid logoArmin Dadras avatar Armin Dadrasorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn GrüningEkaterina Polkh avatar Ekaterina Polkhorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.