cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul Ziereporcid logoDeepti Varshney avatar Deepti Varshneyorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoWolfgang Maier avatar Wolfgang MaierMarius van den Beek avatar Marius van den BeekJasper Ouwerkerk avatar Jasper OuwerkerkScott Cain avatar Scott Cainorcid logoFlorian Heyl avatar Florian HeylNiall Beard avatar Niall Beardorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea Siguretorcid logoPeter van Heusden avatar Peter van HeusdenSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoArmin Dadras avatar Armin Dadrasorcid logoHelena Rasche avatar Helena Rascheorcid logoMartin Čech avatar Martin Čechorcid logoAnthony Bretaudeau avatar Anthony BretaudeauEkaterina Polkh avatar Ekaterina Polkhorcid logoIacopo Cristoferi avatar Iacopo Cristoferiorcid logoMaria Doyle avatar Maria Doyleorcid logoMo Heydarian avatar Mo Heydarianorcid logoAnika Erxleben avatar Anika ErxlebenDonny Vrins avatar Donny VrinsMehmet Tekman avatar Mehmet Tekmanorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoLucille Delisle avatar Lucille DelisleSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoMallory Freeberg avatar Mallory Freebergorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoGraeme Tyson avatar Graeme Tysonorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMyrthe van Baardwijk avatar Myrthe van BaardwijkWilliam Durand avatar William Durandorcid logoMira Kuntz avatar Mira KuntzJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoClemens Blank avatar Clemens BlankYongbin Li avatar Yongbin Liorcid logoEngy Nasr avatar Engy Nasrorcid logoLinelle Abueg avatar Linelle Abuegorcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn Grüningorcid logoMatti Hoch avatar Matti Hoch

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.