cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoArmin Dadras avatar Armin Dadrasorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMatti Hoch avatar Matti HochSanjay Kumar Srikakulam avatar Sanjay Kumar SrikakulamJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoMaria Doyle avatar Maria DoyleJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoBjörn Grüning avatar Björn GrüningMehmet Tekman avatar Mehmet Tekmanorcid logoMallory Freeberg avatar Mallory FreebergWilliam Durand avatar William Durandorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoLinelle Abueg avatar Linelle AbuegYongbin Li avatar Yongbin Liorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoClea Siguret avatar Clea Siguretorcid logoIacopo Cristoferi avatar Iacopo Cristoferiorcid logoAnika Erxleben avatar Anika ErxlebenSimon Bray avatar Simon Brayorcid logoClemens Blank avatar Clemens Blankorcid logoPavankumar Videm avatar Pavankumar VidemScott Cain avatar Scott Cainorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoGraeme Tyson avatar Graeme TysonEkaterina Polkh avatar Ekaterina Polkhorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoEngy Nasr avatar Engy NasrMarius van den Beek avatar Marius van den Beekorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoPaul Zierep avatar Paul Ziereporcid logoDaniela Schneider avatar Daniela Schneiderorcid logoLucille Delisle avatar Lucille DelisleDonny Vrins avatar Donny Vrinsorcid logoHelena Rasche avatar Helena Rascheorcid logoMira Kuntz avatar Mira Kuntzorcid logoMo Heydarian avatar Mo HeydarianNiall Beard avatar Niall Beardorcid logoMartin Čech avatar Martin Čechorcid logoFlorian Heyl avatar Florian Heyl

Funding

These individuals or organisations provided funding support for the development of this resource

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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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de.NBI