cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa galaxy-intro

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy Training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMatti Hoch avatar Matti Hochorcid logoClea Siguret avatar Clea SiguretSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoPaul Zierep avatar Paul Ziereporcid logoMarius van den Beek avatar Marius van den Beekorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoPavankumar Videm avatar Pavankumar VidemEkaterina Polkh avatar Ekaterina Polkhorcid logoMo Heydarian avatar Mo Heydarianorcid logoMaria Doyle avatar Maria Doyleorcid logoCristóbal Gallardo avatar Cristóbal GallardoJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzWilliam Durand avatar William Durandorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiSimon Bray avatar Simon Brayorcid logoGraeme Tyson avatar Graeme Tysonorcid logoHelena Rasche avatar Helena Rascheorcid logoFlorian Heyl avatar Florian Heylorcid logoMira Kuntz avatar Mira Kuntzorcid logoArmin Dadras avatar Armin Dadrasorcid logoBjörn Grüning avatar Björn Grüningorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoLinelle Abueg avatar Linelle Abuegorcid logoEngy Nasr avatar Engy NasrJosé Manuel Domínguez avatar José Manuel Domínguezorcid logoBérénice Batut avatar Bérénice Batutorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoIacopo Cristoferi avatar Iacopo CristoferiNiall Beard avatar Niall BeardScott Cain avatar Scott CainMehmet Tekman avatar Mehmet Tekmanorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoClemens Blank avatar Clemens Blankorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoMallory Freeberg avatar Mallory Freebergorcid logoMartin Čech avatar Martin Čechorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoSaskia Hiltemann avatar Saskia HiltemannDonny Vrins avatar Donny Vrinsorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoLucille Delisle avatar Lucille DelisleYongbin Li avatar Yongbin Liorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)