cyoa

Tutorials covering cyoa

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Foundations of Data Science

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
Data visualisation Olympics - Visualization in R
cyoa R rmarkdown-notebook jupyter-notebook
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook
Data Manipulation Olympics - JQ
cyoa json

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Introduction to Galaxy Analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
microgalaxy Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa

Teaching and Hosting Galaxy training

Lesson Slides Hands-on Recordings Input dataset Workflows
Course Builder
cyoa
Training Infrastructure as a Service
cyoa

Transcriptomics

Lesson Slides Hands-on Recordings Input dataset Workflows
Pathway analysis with the MINERVA Platform
bulk rna-seq viz cyoa
Reference-based RNA-Seq data analysis
bulk rna-seq collections drosophila QC cyoa deutsch español italiano

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
cyoa

Contributors

This material was contributed to by:

orcid logoClea Siguret avatar Clea Siguretorcid logoClemens Blank avatar Clemens Blankorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMarius van den Beek avatar Marius van den BeekNiall Beard avatar Niall Beardorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoDaniela Schneider avatar Daniela Schneiderorcid logoLucille Delisle avatar Lucille DelisleSanjay Kumar Srikakulam avatar Sanjay Kumar Srikakulamorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoMaria Doyle avatar Maria Doyleorcid logoBérénice Batut avatar Bérénice Batutorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoGraeme Tyson avatar Graeme Tysonorcid logoMallory Freeberg avatar Mallory Freebergorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoLinelle Abueg avatar Linelle Abuegorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoIacopo Cristoferi avatar Iacopo CristoferiJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoFlorian Heyl avatar Florian HeylWilliam Durand avatar William Durandorcid logoPaul Zierep avatar Paul ZierepMehmet Tekman avatar Mehmet Tekmanorcid logoMo Heydarian avatar Mo Heydarianorcid logoMartin Čech avatar Martin ČechSimon Bray avatar Simon Brayorcid logoBjörn Grüning avatar Björn Grüningorcid logoDeepti Varshney avatar Deepti VarshneyJosé Manuel Domínguez avatar José Manuel DomínguezScott Cain avatar Scott Cainorcid logoArmin Dadras avatar Armin Dadrasorcid logoMarek Ostaszewski avatar Marek Ostaszewskiorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoPeter van Heusden avatar Peter van HeusdenYongbin Li avatar Yongbin Liorcid logoMatti Hoch avatar Matti HochEkaterina Polkh avatar Ekaterina Polkhorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMira Kuntz avatar Mira Kuntzorcid logoEngy Nasr avatar Engy Nasrorcid logoHelena Rasche avatar Helena RascheDonny Vrins avatar Donny Vrins

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087