Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Ekaterina Polkh

Björn Grüning

Paul Zierep

Jasper Ouwerkerk

Bazante Sanders

Laura Leroi

Hélène Chiapello

Saskia Hiltemann

William Durand

Erwan Corre

Anthony Bretaudeau

Helena Rasche

Bérénice Batut

Valentin Loux

Teresa Müller

Simon Gladman

Gildas Le Corguillé

Mateo Boudet

Miaomiao Zhou

Cristóbal Gallardo

Romane LIBOUBAN

Jonathan Kreplak

Anna Syme

Anika Erxleben

Alexandre Cormier

Felicitas Kindel

Kenji Fujihara

Nicola Soranzo

Torsten Seemann

Niall Beard

Guillaume Gautreau

Twishi Gulati

Esteban Perez-Wohlfeil

Delphine Lariviere

Nathan Dunn

Maria Doyle

Simon Bray

Deepti Varshney

Stéphanie Robin

Anton Nekrutenko

Funding

These individuals or organisations provided funding support for the development of this resource

Avans

ABRomics

ELIXIR Europe

IFB

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.