Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Björn Grüning

Helena Rasche

Twishi Gulati

Valentin Loux

Stéphanie Robin

Ekaterina Polkh

Alexandre Cormier

Hélène Chiapello

Delphine Lariviere

Erwan Corre

Deepti Varshney

Anthony Bretaudeau

Niall Beard

Anna Syme

Kenji Fujihara

Romane LIBOUBAN

Bérénice Batut

Saskia Hiltemann

Laura Leroi

William Durand

Simon Bray

Anika Erxleben

Jasper Ouwerkerk

Cristóbal Gallardo

Mateo Boudet

Anton Nekrutenko

Miaomiao Zhou

Nathan Dunn

Jonathan Kreplak

Simon Gladman

Bazante Sanders

Paul Zierep

Guillaume Gautreau

Teresa Müller

Esteban Perez-Wohlfeil

Torsten Seemann

Felicitas Kindel

Nicola Soranzo

Gildas Le Corguillé

Maria Doyle

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

IFB

Avans

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics