Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena Rascheorcid logoMateo Boudet avatar Mateo BoudetRobert Meller avatar Robert Mellerorcid logoLaura Leroi avatar Laura LeroiSwathi Nataraj avatar Swathi Natarajorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn GrüningVerena Moosmann avatar Verena MoosmannAnup Kumar avatar Anup KumarAva Hoffman avatar Ava HoffmanKatherine Cox avatar Katherine Coxorcid logoBérénice Batut avatar Bérénice BatutMatthias Bernt avatar Matthias Berntorcid logoMaria Doyle avatar Maria Doyleorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoWolfgang Maier avatar Wolfgang MaierFrederick Tan avatar Frederick TanEric Tvedte avatar Eric Tvedteorcid logoClea Siguret avatar Clea Siguretorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnne Fouilloux avatar Anne FouillouxJoachim Wolff avatar Joachim Wolfforcid logoDeepti Varshney avatar Deepti VarshneyElischa Berger avatar Elischa Bergerorcid logoNicola Soranzo avatar Nicola SoranzoNatalie Kucher avatar Natalie KucherElizabeth Humphries avatar Elizabeth Humphriesorcid logoCameron Hyde avatar Cameron HydeWilliam Durand avatar William DurandSimon Bray avatar Simon BrayCandace Savonen avatar Candace Savonenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoErwan Corre avatar Erwan Correorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

References