Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCristóbal Gallardo avatar Cristóbal GallardoSimon Bray avatar Simon Brayorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoHelena Rasche avatar Helena Rascheorcid logoErwan Corre avatar Erwan CorreVerena Moosmann avatar Verena Moosmannorcid logoColine Royaux avatar Coline RoyauxCandace Savonen avatar Candace SavonenAnup Kumar avatar Anup KumarMatthias Bernt avatar Matthias Berntorcid logoMaria Doyle avatar Maria DoyleEric Tvedte avatar Eric Tvedteorcid logoLaura Leroi avatar Laura Leroiorcid logoClea Siguret avatar Clea Siguretorcid logoAnika Erxleben avatar Anika ErxlebenElizabeth Humphries avatar Elizabeth Humphriesorcid logoNicola Soranzo avatar Nicola SoranzoJoachim Wolff avatar Joachim Wolfforcid logoMateo Boudet avatar Mateo Boudetorcid logoAlexandre Cormier avatar Alexandre CormierSwathi Nataraj avatar Swathi NatarajElischa Berger avatar Elischa Bergerorcid logoDeepti Varshney avatar Deepti VarshneyWilliam Durand avatar William Durandorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauKatherine Cox avatar Katherine CoxRobert Meller avatar Robert MellerNatalie Kucher avatar Natalie KucherAva Hoffman avatar Ava Hoffmanorcid logoTeresa Müller avatar Teresa Müllerorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCameron Hyde avatar Cameron Hydeorcid logoBérénice Batut avatar Bérénice BatutFrederick Tan avatar Frederick Tan

Funding

These individuals or organisations provided funding support for the development of this resource

References