Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice BatutElischa Berger avatar Elischa Bergerorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoNicola Soranzo avatar Nicola SoranzoCandace Savonen avatar Candace SavonenNatalie Kucher avatar Natalie Kucherorcid logoMateo Boudet avatar Mateo BoudetMatthias Bernt avatar Matthias Berntorcid logoWolfgang Maier avatar Wolfgang MaierAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoHelena Rasche avatar Helena RascheAnup Kumar avatar Anup Kumarorcid logoColine Royaux avatar Coline Royauxorcid logoSaskia Hiltemann avatar Saskia HiltemannSwathi Nataraj avatar Swathi Natarajorcid logoAnthony Bretaudeau avatar Anthony BretaudeauWilliam Durand avatar William Durandorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan CorreSimon Bray avatar Simon Brayorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoTeresa Müller avatar Teresa MüllerKatherine Cox avatar Katherine Coxorcid logoStéphanie Robin avatar Stéphanie RobinEric Tvedte avatar Eric Tvedteorcid logoLaura Leroi avatar Laura LeroiVerena Moosmann avatar Verena Moosmannorcid logoClea Siguret avatar Clea Siguretorcid logoCameron Hyde avatar Cameron HydeJoachim Wolff avatar Joachim Wolfforcid logoMaria Doyle avatar Maria DoyleFrederick Tan avatar Frederick Tanorcid logoAnne Fouilloux avatar Anne FouillouxElizabeth Humphries avatar Elizabeth HumphriesRobert Meller avatar Robert Meller

Funding

These individuals or organisations provided funding support for the development of this resource

References