Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

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Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice BatutSwathi Nataraj avatar Swathi Natarajorcid logoMateo Boudet avatar Mateo Boudetorcid logoClea Siguret avatar Clea SiguretKatherine Cox avatar Katherine Coxorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoDeepti Varshney avatar Deepti VarshneyMatthias Bernt avatar Matthias Berntorcid logoLaura Leroi avatar Laura LeroiCandace Savonen avatar Candace SavonenElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick Tanorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoBjörn Grüning avatar Björn GrüningJoachim Wolff avatar Joachim Wolfforcid logoSaskia Hiltemann avatar Saskia HiltemannSimon Bray avatar Simon BrayAva Hoffman avatar Ava Hoffmanorcid logoAnthony Bretaudeau avatar Anthony BretaudeauNatalie Kucher avatar Natalie KucherElizabeth Humphries avatar Elizabeth Humphriesorcid logoCameron Hyde avatar Cameron HydeAnup Kumar avatar Anup Kumarorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoHelena Rasche avatar Helena RascheWilliam Durand avatar William Durandorcid logoNicola Soranzo avatar Nicola SoranzoVerena Moosmann avatar Verena Moosmannorcid logoColine Royaux avatar Coline Royauxorcid logoTeresa Müller avatar Teresa Müllerorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert Mellerorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoErwan Corre avatar Erwan Correorcid logoAnne Fouilloux avatar Anne FouillouxEric Tvedte avatar Eric Tvedte

Funding

These individuals or organisations provided funding support for the development of this resource

References