Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoTeresa Müller avatar Teresa Müllerorcid logoClea Siguret avatar Clea Siguretorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoMaria Doyle avatar Maria DoyleVerena Moosmann avatar Verena MoosmannWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia HiltemannEric Tvedte avatar Eric Tvedteorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoBjörn Grüning avatar Björn Grüningorcid logoColine Royaux avatar Coline RoyauxAva Hoffman avatar Ava Hoffmanorcid logoStéphanie Robin avatar Stéphanie RobinSimon Bray avatar Simon BrayFrederick Tan avatar Frederick Tanorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoMateo Boudet avatar Mateo Boudetorcid logoCameron Hyde avatar Cameron Hydeorcid logoNicola Soranzo avatar Nicola SoranzoCandace Savonen avatar Candace SavonenNatalie Kucher avatar Natalie KucherMatthias Bernt avatar Matthias BerntSwathi Nataraj avatar Swathi NatarajJoachim Wolff avatar Joachim Wolfforcid logoBérénice Batut avatar Bérénice Batutorcid logoLaura Leroi avatar Laura Leroiorcid logoErwan Corre avatar Erwan Correorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoDeepti Varshney avatar Deepti VarshneyRobert Meller avatar Robert MellerElischa Berger avatar Elischa BergerElizabeth Humphries avatar Elizabeth HumphriesKatherine Cox avatar Katherine Coxorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAnup Kumar avatar Anup Kumar

Funding

These individuals or organisations provided funding support for the development of this resource

References