Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

Simon Bray avatar Simon Brayorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoLaura Leroi avatar Laura Leroiorcid logoBérénice Batut avatar Bérénice Batutorcid logoColine Royaux avatar Coline RoyauxMatthias Bernt avatar Matthias BerntAva Hoffman avatar Ava Hoffmanorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn GrüningCandace Savonen avatar Candace Savonenorcid logoMateo Boudet avatar Mateo BoudetJoachim Wolff avatar Joachim WolffWilliam Durand avatar William Durandorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoErwan Corre avatar Erwan Correorcid logoCameron Hyde avatar Cameron Hydeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoClea Siguret avatar Clea SiguretAnup Kumar avatar Anup Kumarorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa MüllerElizabeth Humphries avatar Elizabeth Humphriesorcid logoAnne Fouilloux avatar Anne FouillouxVerena Moosmann avatar Verena Moosmannorcid logoStéphanie Robin avatar Stéphanie RobinElischa Berger avatar Elischa BergerFrederick Tan avatar Frederick TanKatherine Cox avatar Katherine Coxorcid logoCristóbal Gallardo avatar Cristóbal GallardoEric Tvedte avatar Eric TvedteSwathi Nataraj avatar Swathi Natarajorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert MellerNatalie Kucher avatar Natalie Kucher

Funding

These individuals or organisations provided funding support for the development of this resource

References