Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

William Durand avatar William DurandCandace Savonen avatar Candace SavonenFrederick Tan avatar Frederick TanElischa Berger avatar Elischa BergerKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo BoudetAnup Kumar avatar Anup KumarElizabeth Humphries avatar Elizabeth HumphriesRobert Meller avatar Robert Mellerorcid logoAlexandre Cormier avatar Alexandre CormierJoachim Wolff avatar Joachim WolffSimon Bray avatar Simon Brayorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoBjörn Grüning avatar Björn GrüningEric Tvedte avatar Eric Tvedteorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMaria Doyle avatar Maria Doyleorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoCristóbal Gallardo avatar Cristóbal GallardoVerena Moosmann avatar Verena Moosmannorcid logoClea Siguret avatar Clea SiguretSwathi Nataraj avatar Swathi Natarajorcid logoLaura Leroi avatar Laura LeroiAva Hoffman avatar Ava Hoffmanorcid logoColine Royaux avatar Coline Royauxorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena RascheMatthias Bernt avatar Matthias BerntNatalie Kucher avatar Natalie Kucherorcid logoErwan Corre avatar Erwan Correorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa Müller

Funding

These individuals or organisations provided funding support for the development of this resource

References