Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoCameron Hyde avatar Cameron HydeEric Tvedte avatar Eric TvedteKatherine Cox avatar Katherine Coxorcid logoHelena Rasche avatar Helena RascheFrederick Tan avatar Frederick Tanorcid logoAnika Erxleben avatar Anika ErxlebenWilliam Durand avatar William Durandorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMateo Boudet avatar Mateo Boudetorcid logoColine Royaux avatar Coline Royauxorcid logoLaura Leroi avatar Laura Leroiorcid logoBérénice Batut avatar Bérénice Batutorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn Grüningorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauJoachim Wolff avatar Joachim Wolfforcid logoAlexandre Cormier avatar Alexandre CormierRobert Meller avatar Robert MellerElizabeth Humphries avatar Elizabeth Humphriesorcid logoDeepti Varshney avatar Deepti VarshneySimon Bray avatar Simon BrayMatthias Bernt avatar Matthias BerntNatalie Kucher avatar Natalie Kucherorcid logoTeresa Müller avatar Teresa MüllerAnup Kumar avatar Anup Kumarorcid logoStéphanie Robin avatar Stéphanie RobinVerena Moosmann avatar Verena MoosmannAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal GallardoSwathi Nataraj avatar Swathi Natarajorcid logoErwan Corre avatar Erwan Correorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMaria Doyle avatar Maria DoyleElischa Berger avatar Elischa BergerCandace Savonen avatar Candace Savonen

Funding

These individuals or organisations provided funding support for the development of this resource

References