Sequence analysis

Analyses of sequences

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

The Basics

These tutorials cover basic operations common to many sequence-bases analyses

Lesson Slides Hands-on Recordings Input dataset Workflows
Mapping
Quality Control

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
NCBI BLAST+ against the MAdLand
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Removal of human reads from SARS-CoV-2 sequencing data
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
Screening assembled genomes for contamination using NCBI FCS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice BatutJoachim Wolff avatar Joachim Wolff

Contributors

This material was contributed to by:

orcid logoTeresa Müller avatar Teresa Müllerorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert MellerAnup Kumar avatar Anup Kumarorcid logoClea Siguret avatar Clea Siguretorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoStéphanie Robin avatar Stéphanie RobinNatalie Kucher avatar Natalie Kucherorcid logoAnika Erxleben avatar Anika ErxlebenWilliam Durand avatar William Durandorcid logoColine Royaux avatar Coline RoyauxAva Hoffman avatar Ava HoffmanCandace Savonen avatar Candace Savonenorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon Brayorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAlexandre Cormier avatar Alexandre CormierSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola SoranzoElizabeth Humphries avatar Elizabeth HumphriesKatherine Cox avatar Katherine CoxJoachim Wolff avatar Joachim Wolfforcid logoSaskia Hiltemann avatar Saskia HiltemannEric Tvedte avatar Eric TvedteMatthias Bernt avatar Matthias BerntFrederick Tan avatar Frederick TanVerena Moosmann avatar Verena Moosmannorcid logoCameron Hyde avatar Cameron Hydeorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan Correorcid logoLaura Leroi avatar Laura LeroiElischa Berger avatar Elischa Bergerorcid logoMateo Boudet avatar Mateo Boudetorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

References