One Health

One Health is unified approach that aims to sustainably balance the health of humans, animals, and ecosystems, as all of the health of each of these groups is closely interlinked.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Computational chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Hands-on: Hands-on: Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
Hands-on: Hands-on: From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
Hands-on: Hands-on: M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy
Hands-on: Hands-on: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Hands-on: Hands-on: Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoTomas Klingström avatar Tomas Klingströmorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoDave Clements avatar Dave ClementsAvans Hogeschool avatar Avans Hogeschoolorcid logoTomas Klingström avatar Tomas Klingströmorcid logoWolfgang Maier avatar Wolfgang MaierBazante Sanders avatar Bazante Sandersorcid logoSimon Gladman avatar Simon Gladmanorcid logoPeter van Heusden avatar Peter van HeusdenMarius van den Beek avatar Marius van den Beekorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia HiltemannDaniela Brites avatar Daniela BritesChristoph Stritt avatar Christoph StrittThoba Lose avatar Thoba LoseAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDaniel Blankenberg avatar Daniel BlankenbergGalo A. Goig avatar Galo A. GoigSimon Bray avatar Simon Bray

Funders

This material was funded by:

ABRomics avatar ABRomicsAddressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe avatar DEFENDBeYond-COVID avatar BeYond-COVIDELIXIR-CONVERGE avatar ELIXIR-CONVERGE