Foundations of Data Science
These lessons will help you get your feet in data science and give you tools to help you slice and dice your data into results.You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.
Data Manipulation Olympics
These tutorials take the same dataset, and show you how to slice and dice it in numerous languages
|Data Manipulation Olympics - JQ|
|Data Manipulation Olympics - SQL|
|Data visualisation Olympics - Visualization in R|
These lessons focus on using the Command Line Interface (CLI) and Bash for processing data.
|Advanced CLI in Galaxy|
|CLI Educational Game - Bashcrawl|
These lessons focus on coding in Python
Introduction to Python
Plotting in Python
These lessons cover coding in Python except they attempt to be very modular, having few interdependencies, allowing you to re-arrange or insert them in your existing course curriculum as needed.
These lessons focus on coding in R
|R basics in Galaxy|
|Advanced R in Galaxy|
|dplyr & tidyverse for data processing|
Here you'll learn to use SQL to query databases and extract meaningful results from them.
|Introduction to SQL|
|SQL Educational Game - Murder Mystery|
|SQL with Python|
|SQL with R|
Scientific Workflow Management Systems
Here you can find brief tutorials on a couple different workflow engines that you might encounter in the wild.
Make & Snakemake
Basics of using Git from the Command Line
Variant Calling Workflow
Version Control with Git
Frequently Asked QuestionsCommon questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
This material is reviewed by our Editorial Board:Helena Rasche Saskia Hiltemann Fotis E. Psomopoulos Bérénice Batut Yvan Le Bras
For any question related to this topic and the content, you can contact them or visit our Gitter channel.
This material was contributed to by:Teresa Müller Saskia Hiltemann Helena Rasche Toby Hodges Sofoklis Keisaris Avans Hogeschool Bérénice Batut Marius van den Beek The Carpentries Bazante Sanders Fotis E. Psomopoulos Lisanna Paladin Maria Christina Maniou Peter van Heusden Donny Vrins NU Knight Lab
This material was funded by:BioNT Gallantries