Foundations of Data Science
These lessons will help you get your feet in data science and give you tools to help you slice and dice your data into results.
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Data Manipulation Olympics
These tutorials take the same dataset, and show you how to slice and dice it in numerous languages
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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| Data Manipulation Olympics | |||||
| Data visualisation Olympics - Visualization in R | |||||
| Data Manipulation Olympics - SQL | |||||
| Data Manipulation Olympics - JQ |
Bash
These lessons focus on using the Command Line Interface (CLI) and Bash for processing data.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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| Advanced CLI in Galaxy | |||||
| CLI Educational Game - Bashcrawl | |||||
| CLI basics |
Python
These lessons focus on coding in Python
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Introduction to Python
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Advanced Python
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Plotting in Python
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Python (Modular)
These lessons cover coding in Python except they attempt to be very modular, having few interdependencies, allowing you to re-arrange or insert them in your existing course curriculum as needed.
R
These lessons focus on coding in R
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| R basics in Galaxy | |||||
| Advanced R in Galaxy | |||||
| dplyr & tidyverse for data processing |
SQL
Here you'll learn to use SQL to query databases and extract meaningful results from them.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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| Advanced SQL | |||||
| Introduction to SQL | |||||
| SQL Educational Game - Murder Mystery | |||||
| SQL with Python | |||||
| SQL with R |
Scientific Workflow Management Systems
Here you can find brief tutorials on a couple different workflow engines that you might encounter in the wild.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Make & Snakemake
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Introduction to Genomics
A data- and galaxy-driven introduction to genomics
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Basics of using Git from the Command Line
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One protein along the UniProt page
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Variant Calling Workflow
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Version Control with Git
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Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Saskia Hiltemann
Fotis E. Psomopoulos
Bérénice Batut
Yvan Le Bras
Contributors
This material was contributed to by:
Marius van den Beek
NU Knight Lab
Anthony Bretaudeau
Beatriz Serrano-Solano
Saskia Hiltemann
Wendi Bacon
Sofoklis Keisaris
Björn Grüning
Peter van Heusden
Nate Coraor
Helena Rasche
Lisanna Paladin
Bazante Sanders
Simon Gladman
Maria Christina Maniou
Yongbin Li
Toby Hodges
Donny Vrins
Fotis E. Psomopoulos
Bérénice Batut
Mateusz Kuzak
Cristóbal Gallardo
Martin Čech
Teresa Müller
Anton Nekrutenko
Funding
These individuals or organisations provided funding support for the development of this resource
