Workflows
These workflows are associated with Data Manipulation Olympics
To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.
GTN Tutorial: Data manipulation Olympics - all steps and exercises
Last updated Nov 3, 2024
Launch in Tutorial Mode
License:
None Specified, defaults to
CC-BY-4.0
Tests: ❌
Results: Not yet automated
flowchart TD 0["ℹ️ Input Dataset\nolympics.tsv"]; style 0 stroke:#2c3143,stroke-width:4px; 1["ℹ️ Input Dataset\ncountry-information.tsv"]; style 1 stroke:#2c3143,stroke-width:4px; 2["ℹ️ Input Dataset\nolympics_2022.tsv"]; style 2 stroke:#2c3143,stroke-width:4px; 3["Line/Word/Character count"]; 0 -->|output| 3; 4["tabular-to-csv"]; 0 -->|output| 4; 5["Sort"]; 0 -->|output| 5; 6["Sort"]; 0 -->|output| 6; 7["Sort"]; 0 -->|output| 7; 8["Sort"]; 0 -->|output| 8; 9["Sort"]; 0 -->|output| 9; 10["Sort"]; 0 -->|output| 10; 11["Filter"]; 0 -->|output| 11; 12["Filter"]; 0 -->|output| 12; 13["Count"]; 0 -->|output| 13; 14["Count"]; 0 -->|output| 14; 15["Count"]; 0 -->|output| 15; 16["Count"]; 0 -->|output| 16; 17["Datamash"]; 0 -->|output| 17; 18["Count"]; 0 -->|output| 18; 19["Datamash"]; 0 -->|output| 19; 20["Filter"]; 0 -->|output| 20; 21["Filter"]; 0 -->|output| 21; 22["Filter"]; 0 -->|output| 22; 23["Filter"]; 0 -->|output| 23; 24["Filter"]; 0 -->|output| 24; 25["Filter"]; 0 -->|output| 25; 26["Filter"]; 0 -->|output| 26; 27["Compute"]; 0 -->|output| 27; 28["Compute"]; 0 -->|output| 28; 29["Cut"]; 0 -->|output| 29; 30["Column Regex Find And Replace"]; 0 -->|output| 30; 31["Column Regex Find And Replace"]; 0 -->|output| 31; 32["Column Regex Find And Replace"]; 0 -->|output| 32; 33["Cut"]; 0 -->|output| 33; 34["Cut"]; 0 -->|output| 34; 35["Datamash"]; 0 -->|output| 35; 36["Datamash"]; 0 -->|output| 36; 37["Datamash"]; 0 -->|output| 37; 38["Datamash"]; 0 -->|output| 38; 39["Datamash"]; 0 -->|output| 39; 40["Count"]; 0 -->|output| 40; 41["Column Regex Find And Replace"]; 0 -->|output| 41; 42["Split file"]; 0 -->|output| 42; 43["Join two Datasets"]; 0 -->|output| 43; 1 -->|output| 43; 44["Remove beginning"]; 2 -->|output| 44; 45["Sort"]; 11 -->|out_file1| 45; 46["Filter"]; 12 -->|out_file1| 46; 47["Cut"]; 28 -->|out_file1| 47; 48["Unique"]; 29 -->|out_file1| 48; 49["Count"]; 41 -->|out_file1| 49; 50["Datamash"]; 41 -->|out_file1| 50; 51["Concatenate datasets"]; 0 -->|output| 51; 44 -->|out_file1| 51; 52["Filter"]; 45 -->|outfile| 52; 53["Sort"]; 46 -->|out_file1| 53; 54["Remove beginning"]; 47 -->|out_file1| 54; 55["Select first"]; 47 -->|out_file1| 55; 56["Sort"]; 48 -->|outfile| 56; 57["Unique"]; 54 -->|out_file1| 57; 58["Concatenate datasets"]; 55 -->|out_file1| 58; 57 -->|outfile| 58; 59["Join two Datasets"]; 0 -->|output| 59; 58 -->|out_file1| 59; 60["Cut"]; 59 -->|out_file1| 60; 61["Line/Word/Character count"]; 60 -->|out_file1| 61;
Importing into Galaxy
Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!Hands-on: Importing a workflow
- Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
- Click on galaxy-upload Import at the top-right of the screen
- Provide your workflow
- Option 1: Paste the URL of the workflow into the box labelled “Archived Workflow URL”
- Option 2: Upload the workflow file in the box labelled “Archived Workflow File”
- Click the Import workflow button
Below is a short video demonstrating how to import a workflow from GitHub using this procedure: