SARS-CoV-2
Tutorials covering analysis of SARS-CoV-2 (COVID 19)
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Assembly
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads |
Computational chemistry
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring |
Using Galaxy and Managing your Data
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Automating Galaxy workflows using the command line | |||||
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis | |||||
Submitting sequence data to ENA |
Sequence analysis
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Removal of human reads from SARS-CoV-2 sequencing data | |||||
SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
Variant Analysis
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis | |||||
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
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