sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

Mehmet Tekman avatar Mehmet Tekmanorcid logoClea Siguret avatar Clea Siguretorcid logoMateo Boudet avatar Mateo Boudetorcid logoCristóbal Gallardo avatar Cristóbal GallardoJoachim Wolff avatar Joachim Wolfforcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoMaria Doyle avatar Maria DoyleEric Tvedte avatar Eric Tvedteorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCameron Hyde avatar Cameron HydeKatherine Cox avatar Katherine CoxFrederick Tan avatar Frederick TanCandace Savonen avatar Candace SavonenRobert Meller avatar Robert Mellerorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoBjörn Grüning avatar Björn Grüningorcid logoColine Royaux avatar Coline Royauxorcid logoAnup Kumar avatar Anup KumarNiall Beard avatar Niall Beardorcid logoMatthias Bernt avatar Matthias Berntorcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoHelena Rasche avatar Helena RascheNatalie Kucher avatar Natalie KucherEkaterina Polkh avatar Ekaterina Polkhorcid logoDeepti Varshney avatar Deepti VarshneySwathi Nataraj avatar Swathi Natarajorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoWolfgang Maier avatar Wolfgang MaierElischa Berger avatar Elischa BergerAva Hoffman avatar Ava HoffmanElizabeth Humphries avatar Elizabeth Humphriesorcid logoErwan Corre avatar Erwan CorreWilliam Durand avatar William Durandorcid logoLaura Leroi avatar Laura LeroiVerena Moosmann avatar Verena MoosmannSimon Bray avatar Simon Bray

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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MAdLand
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Australian BioCommons
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NHGRI GDS Community Network
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ABRomics
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Melbourne Bioinformatics
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NIH
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The University of Melbourne
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DataPLANT
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NHGRI ANVIL