sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoLaura Leroi avatar Laura LeroiEric Tvedte avatar Eric TvedteNiall Beard avatar Niall BeardMatthias Bernt avatar Matthias Berntorcid logoColine Royaux avatar Coline Royauxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoDeepti Varshney avatar Deepti VarshneyAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBjörn Grüning avatar Björn Grüningorcid logoClea Siguret avatar Clea SiguretElischa Berger avatar Elischa Bergerorcid logoTeresa Müller avatar Teresa MüllerEkaterina Polkh avatar Ekaterina Polkhorcid logoBérénice Batut avatar Bérénice Batutorcid logoMateo Boudet avatar Mateo Boudetorcid logoErwan Corre avatar Erwan Correorcid logoStéphanie Robin avatar Stéphanie RobinJoachim Wolff avatar Joachim Wolfforcid logoCameron Hyde avatar Cameron Hydeorcid logoAnup Kumar avatar Anup Kumarorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoTristan Reynolds avatar Tristan ReynoldsFrederick Tan avatar Frederick Tanorcid logoHelena Rasche avatar Helena Rascheorcid logoAnika Erxleben avatar Anika ErxlebenMehmet Tekman avatar Mehmet TekmanCandace Savonen avatar Candace SavonenKatherine Cox avatar Katherine CoxElizabeth Humphries avatar Elizabeth HumphriesRobert Meller avatar Robert MellerVerena Moosmann avatar Verena Moosmannorcid logoWolfgang Maier avatar Wolfgang MaierWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne FouillouxSimon Bray avatar Simon Brayorcid logoMaria Doyle avatar Maria DoyleSwathi Nataraj avatar Swathi NatarajNatalie Kucher avatar Natalie Kucher

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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NHGRI ANVIL
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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The University of Melbourne
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DataPLANT
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NHGRI GDS Community Network
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NIH
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MAdLand
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Melbourne Bioinformatics