sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoDeepti Varshney avatar Deepti VarshneyKatherine Cox avatar Katherine Coxorcid logoBérénice Batut avatar Bérénice Batutorcid logoCameron Hyde avatar Cameron HydeMehmet Tekman avatar Mehmet Tekmanorcid logoLaura Leroi avatar Laura LeroiSimon Bray avatar Simon Brayorcid logoTristan Reynolds avatar Tristan ReynoldsElischa Berger avatar Elischa BergerSwathi Nataraj avatar Swathi NatarajElizabeth Humphries avatar Elizabeth HumphriesNatalie Kucher avatar Natalie Kucherorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoErwan Corre avatar Erwan CorreRobert Meller avatar Robert MellerVerena Moosmann avatar Verena Moosmannorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauCandace Savonen avatar Candace SavonenEric Tvedte avatar Eric Tvedteorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoColine Royaux avatar Coline RoyauxFrederick Tan avatar Frederick TanMatthias Bernt avatar Matthias Berntorcid logoMaria Doyle avatar Maria Doyleorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAnne Fouilloux avatar Anne FouillouxNiall Beard avatar Niall BeardEkaterina Polkh avatar Ekaterina Polkhorcid logoMateo Boudet avatar Mateo BoudetJoachim Wolff avatar Joachim Wolfforcid logoTeresa Müller avatar Teresa Müllerorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoClea Siguret avatar Clea SiguretAva Hoffman avatar Ava Hoffmanorcid logoHelena Rasche avatar Helena Rascheorcid logoAnup Kumar avatar Anup KumarWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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NHGRI GDS Community Network
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Australian BioCommons
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NIH
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ABRomics
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The University of Melbourne
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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NHGRI ANVIL
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DataPLANT
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MAdLand
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.