sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoCameron Hyde avatar Cameron Hydeorcid logoAnne Fouilloux avatar Anne FouillouxFrederick Tan avatar Frederick TanElizabeth Humphries avatar Elizabeth HumphriesSimon Bray avatar Simon BrayNatalie Kucher avatar Natalie Kucherorcid logoLaura Leroi avatar Laura Leroiorcid logoColine Royaux avatar Coline Royauxorcid logoBérénice Batut avatar Bérénice Batutorcid logoDeepti Varshney avatar Deepti VarshneyNiall Beard avatar Niall Beardorcid logoMateo Boudet avatar Mateo BoudetCandace Savonen avatar Candace SavonenMehmet Tekman avatar Mehmet TekmanVerena Moosmann avatar Verena Moosmannorcid logoTeresa Müller avatar Teresa MüllerElischa Berger avatar Elischa BergerEkaterina Polkh avatar Ekaterina Polkhorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony BretaudeauEric Tvedte avatar Eric Tvedteorcid logoSaskia Hiltemann avatar Saskia HiltemannSwathi Nataraj avatar Swathi NatarajAva Hoffman avatar Ava Hoffmanorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoClea Siguret avatar Clea SiguretJoachim Wolff avatar Joachim Wolfforcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMaria Doyle avatar Maria Doyleorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan CorreKatherine Cox avatar Katherine Coxorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnup Kumar avatar Anup KumarWilliam Durand avatar William Durandorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTristan Reynolds avatar Tristan ReynoldsRobert Meller avatar Robert MellerMatthias Bernt avatar Matthias Berntorcid logoStéphanie Robin avatar Stéphanie Robin

Funding

These individuals or organisations provided funding support for the development of this resource

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MAdLand
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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DataPLANT
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NHGRI ANVIL
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NIH
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Melbourne Bioinformatics
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NHGRI GDS Community Network
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics