sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn Grüningorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoDeepti Varshney avatar Deepti VarshneyKatherine Cox avatar Katherine Coxorcid logoBérénice Batut avatar Bérénice Batutorcid logoCameron Hyde avatar Cameron Hydeorcid logoNicola Soranzo avatar Nicola SoranzoMehmet Tekman avatar Mehmet TekmanVerena Moosmann avatar Verena Moosmannorcid logoMaria Doyle avatar Maria Doyleorcid logoAnne Fouilloux avatar Anne FouillouxEric Tvedte avatar Eric Tvedteorcid logoAnup Kumar avatar Anup KumarFrederick Tan avatar Frederick Tanorcid logoAnika Erxleben avatar Anika ErxlebenElizabeth Humphries avatar Elizabeth Humphriesorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoLaura Leroi avatar Laura Leroiorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoColine Royaux avatar Coline RoyauxSimon Bray avatar Simon Brayorcid logoTeresa Müller avatar Teresa Müllerorcid logoErwan Corre avatar Erwan CorreCandace Savonen avatar Candace SavonenAva Hoffman avatar Ava HoffmanMatthias Bernt avatar Matthias BerntNatalie Kucher avatar Natalie KucherWilliam Durand avatar William DurandSwathi Nataraj avatar Swathi Natarajorcid logoHelena Rasche avatar Helena RascheRobert Meller avatar Robert Mellerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoWolfgang Maier avatar Wolfgang MaierEkaterina Polkh avatar Ekaterina Polkhorcid logoMateo Boudet avatar Mateo Boudetorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoClea Siguret avatar Clea SiguretNiall Beard avatar Niall BeardJoachim Wolff avatar Joachim WolffElischa Berger avatar Elischa Berger

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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Australian BioCommons
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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DataPLANT
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NIH
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The University of Melbourne
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NHGRI GDS Community Network
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NHGRI ANVIL
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Melbourne Bioinformatics
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MAdLand