sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena RascheNatalie Kucher avatar Natalie Kucherorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoAnne Fouilloux avatar Anne FouillouxCandace Savonen avatar Candace SavonenSimon Bray avatar Simon BrayJoachim Wolff avatar Joachim Wolfforcid logoStéphanie Robin avatar Stéphanie RobinEkaterina Polkh avatar Ekaterina PolkhWilliam Durand avatar William DurandMatthias Bernt avatar Matthias BerntElischa Berger avatar Elischa Bergerorcid logoClea Siguret avatar Clea Siguretorcid logoCameron Hyde avatar Cameron HydeMehmet Tekman avatar Mehmet TekmanVerena Moosmann avatar Verena MoosmannEric Tvedte avatar Eric TvedteSwathi Nataraj avatar Swathi Natarajorcid logoNicola Soranzo avatar Nicola SoranzoKatherine Cox avatar Katherine Coxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnup Kumar avatar Anup Kumarorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn Grüningorcid logoMaria Doyle avatar Maria DoyleElizabeth Humphries avatar Elizabeth Humphriesorcid logoWolfgang Maier avatar Wolfgang MaierNiall Beard avatar Niall Beardorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoLaura Leroi avatar Laura Leroiorcid logoBérénice Batut avatar Bérénice BatutRobert Meller avatar Robert Mellerorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMateo Boudet avatar Mateo BoudetAva Hoffman avatar Ava HoffmanFrederick Tan avatar Frederick Tanorcid logoErwan Corre avatar Erwan Correorcid logoTeresa Müller avatar Teresa Müllerorcid logoAlexandre Cormier avatar Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource

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MAdLand
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The University of Melbourne
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ABRomics
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NIH
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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Melbourne Bioinformatics
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DataPLANT
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Australian BioCommons
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NHGRI GDS Community Network
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NHGRI ANVIL
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.