sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

Joachim Wolff avatar Joachim Wolfforcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnup Kumar avatar Anup Kumarorcid logoTristan Reynolds avatar Tristan ReynoldsElischa Berger avatar Elischa BergerVerena Moosmann avatar Verena MoosmannRobert Meller avatar Robert MellerSimon Bray avatar Simon BrayFrederick Tan avatar Frederick TanCandace Savonen avatar Candace Savonenorcid logoLaura Leroi avatar Laura LeroiAva Hoffman avatar Ava HoffmanEkaterina Polkh avatar Ekaterina Polkhorcid logoAlexandre Cormier avatar Alexandre CormierMehmet Tekman avatar Mehmet Tekmanorcid logoTeresa Müller avatar Teresa MüllerElizabeth Humphries avatar Elizabeth Humphriesorcid logoAnika Erxleben avatar Anika ErxlebenKatherine Cox avatar Katherine Coxorcid logoColine Royaux avatar Coline RoyauxWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBérénice Batut avatar Bérénice Batutorcid logoErwan Corre avatar Erwan Correorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn GrüningSwathi Nataraj avatar Swathi NatarajEric Tvedte avatar Eric TvedteMatthias Bernt avatar Matthias Berntorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoMaria Doyle avatar Maria DoyleNiall Beard avatar Niall Beardorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoClea Siguret avatar Clea SiguretNatalie Kucher avatar Natalie Kucherorcid logoMateo Boudet avatar Mateo Boudetorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHelena Rasche avatar Helena Rascheorcid logoCameron Hyde avatar Cameron Hyde

Funding

These individuals or organisations provided funding support for the development of this resource

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ABRomics
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NIH
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DataPLANT
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NHGRI ANVIL
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NHGRI GDS Community Network
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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The University of Melbourne
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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MAdLand
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Melbourne Bioinformatics