sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice BatutSimon Bray avatar Simon Brayorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDeepti Varshney avatar Deepti VarshneyElizabeth Humphries avatar Elizabeth Humphriesorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAlexandre Cormier avatar Alexandre CormierEric Tvedte avatar Eric TvedteRobert Meller avatar Robert MellerAva Hoffman avatar Ava HoffmanWilliam Durand avatar William Durandorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoColine Royaux avatar Coline Royauxorcid logoMaria Doyle avatar Maria DoyleKatherine Cox avatar Katherine Coxorcid logoBjörn Grüning avatar Björn GrüningElischa Berger avatar Elischa Bergerorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMehmet Tekman avatar Mehmet Tekmanorcid logoLaura Leroi avatar Laura Leroiorcid logoClea Siguret avatar Clea Siguretorcid logoMateo Boudet avatar Mateo Boudetorcid logoTeresa Müller avatar Teresa MüllerNiall Beard avatar Niall BeardMatthias Bernt avatar Matthias BerntJoachim Wolff avatar Joachim Wolfforcid logoErwan Corre avatar Erwan CorreEkaterina Polkh avatar Ekaterina Polkhorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnup Kumar avatar Anup Kumarorcid logoAnne Fouilloux avatar Anne FouillouxVerena Moosmann avatar Verena MoosmannNatalie Kucher avatar Natalie KucherSwathi Nataraj avatar Swathi Natarajorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHelena Rasche avatar Helena RascheCandace Savonen avatar Candace SavonenFrederick Tan avatar Frederick Tanorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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MAdLand
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NHGRI ANVIL
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NIH
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Melbourne Bioinformatics
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Australian BioCommons
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics
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The University of Melbourne
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NHGRI GDS Community Network
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DataPLANT