sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa Müllerorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnika Erxleben avatar Anika ErxlebenNiall Beard avatar Niall Beardorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAnup Kumar avatar Anup Kumarorcid logoColine Royaux avatar Coline Royauxorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMaria Doyle avatar Maria Doyleorcid logoDeepti Varshney avatar Deepti VarshneySimon Bray avatar Simon BrayJoachim Wolff avatar Joachim Wolfforcid logoAnne Fouilloux avatar Anne FouillouxKatherine Cox avatar Katherine Coxorcid logoBjörn Grüning avatar Björn GrüningElischa Berger avatar Elischa Bergerorcid logoCameron Hyde avatar Cameron HydeAva Hoffman avatar Ava Hoffmanorcid logoClea Siguret avatar Clea SiguretSwathi Nataraj avatar Swathi NatarajMehmet Tekman avatar Mehmet TekmanFrederick Tan avatar Frederick TanVerena Moosmann avatar Verena Moosmannorcid logoAlexandre Cormier avatar Alexandre CormierEkaterina Polkh avatar Ekaterina Polkhorcid logoMatthias Bernt avatar Matthias BerntElizabeth Humphries avatar Elizabeth HumphriesWilliam Durand avatar William DurandRobert Meller avatar Robert Mellerorcid logoErwan Corre avatar Erwan Correorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoLaura Leroi avatar Laura Leroiorcid logoMateo Boudet avatar Mateo Boudetorcid logoBérénice Batut avatar Bérénice BatutCandace Savonen avatar Candace Savonenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoHelena Rasche avatar Helena RascheNatalie Kucher avatar Natalie KucherEric Tvedte avatar Eric Tvedte

Funding

These individuals or organisations provided funding support for the development of this resource

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The University of Melbourne
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NHGRI ANVIL
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DataPLANT
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics
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Melbourne Bioinformatics
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NHGRI GDS Community Network
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NIH
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Australian BioCommons
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MAdLand
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.