sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoAnup Kumar avatar Anup Kumarorcid logoMaria Doyle avatar Maria DoyleKatherine Cox avatar Katherine Coxorcid logoMateo Boudet avatar Mateo BoudetEkaterina Polkh avatar Ekaterina Polkhorcid logoClea Siguret avatar Clea Siguretorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal GallardoRobert Meller avatar Robert MellerAva Hoffman avatar Ava Hoffmanorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoNicola Soranzo avatar Nicola SoranzoCandace Savonen avatar Candace Savonenorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan Correorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSwathi Nataraj avatar Swathi Natarajorcid logoLaura Leroi avatar Laura Leroiorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoTristan Reynolds avatar Tristan ReynoldsEric Tvedte avatar Eric TvedteFrederick Tan avatar Frederick Tanorcid logoCameron Hyde avatar Cameron HydeJoachim Wolff avatar Joachim WolffElizabeth Humphries avatar Elizabeth HumphriesMatthias Bernt avatar Matthias BerntWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBérénice Batut avatar Bérénice BatutVerena Moosmann avatar Verena MoosmannSimon Bray avatar Simon BrayElischa Berger avatar Elischa BergerNiall Beard avatar Niall Beardorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa Müllerorcid logoWolfgang Maier avatar Wolfgang MaierNatalie Kucher avatar Natalie KucherMehmet Tekman avatar Mehmet Tekmanorcid logoColine Royaux avatar Coline Royaux

Funding

These individuals or organisations provided funding support for the development of this resource

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The University of Melbourne
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NHGRI ANVIL
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Melbourne Bioinformatics
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NIH
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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NHGRI GDS Community Network
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MAdLand
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DataPLANT
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Australian BioCommons
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ABRomics