sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal GallardoElizabeth Humphries avatar Elizabeth HumphriesMehmet Tekman avatar Mehmet TekmanEric Tvedte avatar Eric Tvedteorcid logoMateo Boudet avatar Mateo Boudetorcid logoErwan Corre avatar Erwan Correorcid logoAlexandre Cormier avatar Alexandre CormierElischa Berger avatar Elischa Bergerorcid logoLaura Leroi avatar Laura Leroiorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn Grüningorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTristan Reynolds avatar Tristan ReynoldsEkaterina Polkh avatar Ekaterina Polkhorcid logoMaria Doyle avatar Maria DoyleRobert Meller avatar Robert Mellerorcid logoBérénice Batut avatar Bérénice BatutNiall Beard avatar Niall Beardorcid logoTeresa Müller avatar Teresa Müllerorcid logoCameron Hyde avatar Cameron HydeCandace Savonen avatar Candace SavonenKatherine Cox avatar Katherine CoxMatthias Bernt avatar Matthias Berntorcid logoDeepti Varshney avatar Deepti VarshneyVerena Moosmann avatar Verena MoosmannSimon Bray avatar Simon BrayNatalie Kucher avatar Natalie KucherWilliam Durand avatar William Durandorcid logoColine Royaux avatar Coline Royauxorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoClea Siguret avatar Clea Siguretorcid logoAnup Kumar avatar Anup Kumarorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoAnthony Bretaudeau avatar Anthony BretaudeauJoachim Wolff avatar Joachim WolffSwathi Nataraj avatar Swathi Natarajorcid logoAnika Erxleben avatar Anika ErxlebenFrederick Tan avatar Frederick Tanorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoWolfgang Maier avatar Wolfgang MaierAva Hoffman avatar Ava Hoffman

Funding

These individuals or organisations provided funding support for the development of this resource

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DataPLANT
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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MAdLand
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The University of Melbourne
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Melbourne Bioinformatics
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ABRomics
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NHGRI ANVIL
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NHGRI GDS Community Network
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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NIH
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Australian BioCommons