sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnup Kumar avatar Anup KumarEric Tvedte avatar Eric TvedteElizabeth Humphries avatar Elizabeth Humphriesorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMateo Boudet avatar Mateo Boudetorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoLaura Leroi avatar Laura LeroiNatalie Kucher avatar Natalie Kucherorcid logoAnne Fouilloux avatar Anne FouillouxSwathi Nataraj avatar Swathi Natarajorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMaria Doyle avatar Maria DoyleVerena Moosmann avatar Verena Moosmannorcid logoCameron Hyde avatar Cameron HydeMehmet Tekman avatar Mehmet TekmanFrederick Tan avatar Frederick Tanorcid logoHelena Rasche avatar Helena Rascheorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoClea Siguret avatar Clea SiguretRobert Meller avatar Robert Mellerorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnika Erxleben avatar Anika ErxlebenAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa Müllerorcid logoSaskia Hiltemann avatar Saskia HiltemannEkaterina Polkh avatar Ekaterina PolkhKatherine Cox avatar Katherine Coxorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoErwan Corre avatar Erwan Correorcid logoMatthias Bernt avatar Matthias BerntSimon Bray avatar Simon BrayNiall Beard avatar Niall Beardorcid logoColine Royaux avatar Coline Royauxorcid logoBjörn Grüning avatar Björn GrüningJoachim Wolff avatar Joachim WolffElischa Berger avatar Elischa BergerWilliam Durand avatar William DurandCandace Savonen avatar Candace Savonen

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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NIH
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Melbourne Bioinformatics
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The University of Melbourne
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MAdLand
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DataPLANT
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ABRomics
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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Australian BioCommons
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NHGRI GDS Community Network
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NHGRI ANVIL