sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoErwan Corre avatar Erwan Correorcid logoAnup Kumar avatar Anup KumarAva Hoffman avatar Ava Hoffmanorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoTeresa Müller avatar Teresa Müllerorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnne Fouilloux avatar Anne FouillouxKatherine Cox avatar Katherine Coxorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal GallardoSwathi Nataraj avatar Swathi NatarajElizabeth Humphries avatar Elizabeth HumphriesJoachim Wolff avatar Joachim WolffEric Tvedte avatar Eric TvedteWilliam Durand avatar William Durandorcid logoMaria Doyle avatar Maria DoyleSimon Bray avatar Simon BrayMatthias Bernt avatar Matthias BerntNatalie Kucher avatar Natalie Kucherorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTristan Reynolds avatar Tristan ReynoldsNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn Grüningorcid logoMateo Boudet avatar Mateo BoudetEkaterina Polkh avatar Ekaterina Polkhorcid logoColine Royaux avatar Coline RoyauxCandace Savonen avatar Candace SavonenElischa Berger avatar Elischa Bergerorcid logoClea Siguret avatar Clea SiguretRobert Meller avatar Robert MellerMehmet Tekman avatar Mehmet Tekmanorcid logoLaura Leroi avatar Laura LeroiVerena Moosmann avatar Verena Moosmannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoSaskia Hiltemann avatar Saskia HiltemannFrederick Tan avatar Frederick Tan

Funding

These individuals or organisations provided funding support for the development of this resource

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DataPLANT
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NHGRI GDS Community Network
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Melbourne Bioinformatics
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MAdLand
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NIH
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NHGRI ANVIL
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ABRomics
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Australian BioCommons
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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The University of Melbourne
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.