sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

Candace Savonen avatar Candace Savonenorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoHelena Rasche avatar Helena Rascheorcid logoAnup Kumar avatar Anup KumarFrederick Tan avatar Frederick Tanorcid logoTeresa Müller avatar Teresa MüllerKatherine Cox avatar Katherine CoxEkaterina Polkh avatar Ekaterina PolkhSwathi Nataraj avatar Swathi NatarajElizabeth Humphries avatar Elizabeth Humphriesorcid logoBjörn Grüning avatar Björn Grüningorcid logoMaria Doyle avatar Maria Doyleorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauVerena Moosmann avatar Verena MoosmannMehmet Tekman avatar Mehmet TekmanMatthias Bernt avatar Matthias Berntorcid logoCameron Hyde avatar Cameron HydeAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal GallardoSimon Bray avatar Simon BrayElischa Berger avatar Elischa BergerNiall Beard avatar Niall BeardNatalie Kucher avatar Natalie Kucherorcid logoLaura Leroi avatar Laura Leroiorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoStéphanie Robin avatar Stéphanie RobinEric Tvedte avatar Eric Tvedteorcid logoClea Siguret avatar Clea Siguretorcid logoErwan Corre avatar Erwan CorreRobert Meller avatar Robert Mellerorcid logoBérénice Batut avatar Bérénice Batutorcid logoMateo Boudet avatar Mateo BoudetJoachim Wolff avatar Joachim Wolfforcid logoColine Royaux avatar Coline RoyauxWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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MAdLand
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DataPLANT
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ABRomics
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NHGRI GDS Community Network
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Melbourne Bioinformatics
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NIH
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NHGRI ANVIL
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The University of Melbourne
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)