sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoMatthias Bernt avatar Matthias Berntorcid logoTeresa Müller avatar Teresa Müllerorcid logoMateo Boudet avatar Mateo Boudetorcid logoColine Royaux avatar Coline Royauxorcid logoMaria Doyle avatar Maria Doyleorcid logoHelena Rasche avatar Helena Rascheorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnthony Bretaudeau avatar Anthony BretaudeauKatherine Cox avatar Katherine CoxNiall Beard avatar Niall Beardorcid logoBjörn Grüning avatar Björn GrüningMehmet Tekman avatar Mehmet Tekmanorcid logoBérénice Batut avatar Bérénice BatutRobert Meller avatar Robert Mellerorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoDeepti Varshney avatar Deepti VarshneyWilliam Durand avatar William Durandorcid logoStéphanie Robin avatar Stéphanie RobinEkaterina Polkh avatar Ekaterina PolkhNatalie Kucher avatar Natalie Kucherorcid logoAnika Erxleben avatar Anika ErxlebenCandace Savonen avatar Candace SavonenElischa Berger avatar Elischa Bergerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnup Kumar avatar Anup KumarJoachim Wolff avatar Joachim WolffSwathi Nataraj avatar Swathi Natarajorcid logoClea Siguret avatar Clea SiguretVerena Moosmann avatar Verena Moosmannorcid logoWolfgang Maier avatar Wolfgang MaierSimon Bray avatar Simon Brayorcid logoTristan Reynolds avatar Tristan ReynoldsElizabeth Humphries avatar Elizabeth HumphriesEric Tvedte avatar Eric Tvedteorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre CormierFrederick Tan avatar Frederick TanAva Hoffman avatar Ava Hoffmanorcid logoLaura Leroi avatar Laura Leroiorcid logoErwan Corre avatar Erwan Corre

Funding

These individuals or organisations provided funding support for the development of this resource

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NHGRI GDS Community Network
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Australian BioCommons
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics
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Melbourne Bioinformatics
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MAdLand
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NHGRI ANVIL
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The University of Melbourne
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DataPLANT
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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NIH