sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoMatthias Bernt avatar Matthias Berntorcid logoAnup Kumar avatar Anup Kumarorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnika Erxleben avatar Anika ErxlebenKatherine Cox avatar Katherine Coxorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoColine Royaux avatar Coline Royauxorcid logoMaria Doyle avatar Maria Doyleorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura LeroiVerena Moosmann avatar Verena MoosmannEkaterina Polkh avatar Ekaterina Polkhorcid logoMateo Boudet avatar Mateo BoudetElischa Berger avatar Elischa Bergerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDeepti Varshney avatar Deepti VarshneyEric Tvedte avatar Eric TvedteAva Hoffman avatar Ava Hoffmanorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoStéphanie Robin avatar Stéphanie RobinMehmet Tekman avatar Mehmet TekmanSimon Bray avatar Simon BrayNiall Beard avatar Niall Beardorcid logoHelena Rasche avatar Helena RascheRobert Meller avatar Robert MellerWilliam Durand avatar William Durandorcid logoBérénice Batut avatar Bérénice BatutNatalie Kucher avatar Natalie Kucherorcid logoTeresa Müller avatar Teresa MüllerCandace Savonen avatar Candace SavonenFrederick Tan avatar Frederick Tanorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoErwan Corre avatar Erwan Correorcid logoWolfgang Maier avatar Wolfgang MaierSwathi Nataraj avatar Swathi NatarajElizabeth Humphries avatar Elizabeth HumphriesJoachim Wolff avatar Joachim Wolff

Funding

These individuals or organisations provided funding support for the development of this resource

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The University of Melbourne
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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NHGRI GDS Community Network
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NIH
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NHGRI ANVIL
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DataPLANT
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics
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MAdLand
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Melbourne Bioinformatics