sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoColine Royaux avatar Coline RoyauxEkaterina Polkh avatar Ekaterina Polkhorcid logoMatthias Bernt avatar Matthias Berntorcid logoCameron Hyde avatar Cameron HydeRobert Meller avatar Robert MellerJoachim Wolff avatar Joachim Wolfforcid logoAnika Erxleben avatar Anika ErxlebenKatherine Cox avatar Katherine CoxAva Hoffman avatar Ava Hoffmanorcid logoClea Siguret avatar Clea Siguretorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMateo Boudet avatar Mateo Boudetorcid logoDeepti Varshney avatar Deepti VarshneyFrederick Tan avatar Frederick Tanorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoLaura Leroi avatar Laura Leroiorcid logoBérénice Batut avatar Bérénice BatutSwathi Nataraj avatar Swathi Natarajorcid logoAnup Kumar avatar Anup KumarElischa Berger avatar Elischa Bergerorcid logoAlexandre Cormier avatar Alexandre CormierSimon Bray avatar Simon BrayWilliam Durand avatar William DurandEric Tvedte avatar Eric Tvedteorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoCristóbal Gallardo avatar Cristóbal GallardoVerena Moosmann avatar Verena Moosmannorcid logoHelena Rasche avatar Helena RascheElizabeth Humphries avatar Elizabeth Humphriesorcid logoTeresa Müller avatar Teresa MüllerNiall Beard avatar Niall Beardorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoMaria Doyle avatar Maria Doyleorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBjörn Grüning avatar Björn Grüningorcid logoErwan Corre avatar Erwan CorreCandace Savonen avatar Candace SavonenNatalie Kucher avatar Natalie Kucherorcid logoWolfgang Maier avatar Wolfgang MaierMehmet Tekman avatar Mehmet Tekman

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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DataPLANT
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Australian BioCommons
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NHGRI GDS Community Network
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ABRomics
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Melbourne Bioinformatics
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NIH
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NHGRI ANVIL
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MAdLand