sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

Ava Hoffman avatar Ava Hoffmanorcid logoDeepti Varshney avatar Deepti VarshneySimon Bray avatar Simon BrayVerena Moosmann avatar Verena Moosmannorcid logoErwan Corre avatar Erwan Correorcid logoBjörn Grüning avatar Björn GrüningKatherine Cox avatar Katherine Coxorcid logoAnika Erxleben avatar Anika Erxlebenorcid logoHelena Rasche avatar Helena Rascheorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoNicola Soranzo avatar Nicola SoranzoEric Tvedte avatar Eric Tvedteorcid logoCristóbal Gallardo avatar Cristóbal GallardoMatthias Bernt avatar Matthias BerntWilliam Durand avatar William Durandorcid logoAnup Kumar avatar Anup Kumarorcid logoAnthony Bretaudeau avatar Anthony BretaudeauNatalie Kucher avatar Natalie Kucherorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoTeresa Müller avatar Teresa MüllerMehmet Tekman avatar Mehmet Tekmanorcid logoLaura Leroi avatar Laura Leroiorcid logoCameron Hyde avatar Cameron Hydeorcid logoColine Royaux avatar Coline RoyauxElischa Berger avatar Elischa Bergerorcid logoBérénice Batut avatar Bérénice BatutNiall Beard avatar Niall BeardElizabeth Humphries avatar Elizabeth HumphriesFrederick Tan avatar Frederick Tanorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoSaskia Hiltemann avatar Saskia HiltemannJoachim Wolff avatar Joachim WolffSwathi Nataraj avatar Swathi NatarajRobert Meller avatar Robert Mellerorcid logoClea Siguret avatar Clea Siguretorcid logoMaria Doyle avatar Maria Doyleorcid logoMateo Boudet avatar Mateo BoudetCandace Savonen avatar Candace Savonenorcid logoStéphanie Robin avatar Stéphanie RobinEkaterina Polkh avatar Ekaterina Polkh

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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MAdLand
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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ABRomics
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The University of Melbourne
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Australian BioCommons
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NHGRI GDS Community Network
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NHGRI ANVIL
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NIH
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Melbourne Bioinformatics
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DataPLANT