sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

orcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnup Kumar avatar Anup Kumarorcid logoClea Siguret avatar Clea Siguretorcid logoMateo Boudet avatar Mateo Boudetorcid logoAnne Fouilloux avatar Anne FouillouxSimon Bray avatar Simon BrayAva Hoffman avatar Ava Hoffmanorcid logoCristóbal Gallardo avatar Cristóbal GallardoMatthias Bernt avatar Matthias BerntSwathi Nataraj avatar Swathi NatarajFrederick Tan avatar Frederick TanMehmet Tekman avatar Mehmet Tekmanorcid logoColine Royaux avatar Coline Royauxorcid logoCameron Hyde avatar Cameron Hydeorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoHelena Rasche avatar Helena Rascheorcid logoBérénice Batut avatar Bérénice Batutorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoTristan Reynolds avatar Tristan ReynoldsElischa Berger avatar Elischa BergerWilliam Durand avatar William Durandorcid logoWolfgang Maier avatar Wolfgang MaierElizabeth Humphries avatar Elizabeth Humphriesorcid logoAnika Erxleben avatar Anika ErxlebenRobert Meller avatar Robert MellerCandace Savonen avatar Candace SavonenNatalie Kucher avatar Natalie KucherVerena Moosmann avatar Verena MoosmannEkaterina Polkh avatar Ekaterina Polkhorcid logoLaura Leroi avatar Laura Leroiorcid logoTeresa Müller avatar Teresa MüllerJoachim Wolff avatar Joachim Wolfforcid logoMaria Doyle avatar Maria Doyleorcid logoBjörn Grüning avatar Björn GrüningKatherine Cox avatar Katherine Coxorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoErwan Corre avatar Erwan CorreNiall Beard avatar Niall Beardorcid logoAlexandre Cormier avatar Alexandre CormierEric Tvedte avatar Eric Tvedte

Funding

These individuals or organisations provided funding support for the development of this resource

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MAdLand
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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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NIH
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ABRomics
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The University of Melbourne
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Australian BioCommons
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NHGRI ANVIL
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DataPLANT
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Melbourne Bioinformatics
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NHGRI GDS Community Network