sequence-analysis

Tutorials covering sequence-analysis

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Clean and manage Sanger sequences from raw files to aligned consensus
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
plants
Mapping
deutsch español italiano
NCBI BLAST+ against the MAdLand
plants
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes
virology
Quality Control
deutsch español italiano
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
illumina bacteria microgalaxy
Removal of human reads from SARS-CoV-2 sequencing data
covid19
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1
Screening assembled genomes for contamination using NCBI FCS

Contributors

This material was contributed to by:

Elischa Berger avatar Elischa Bergerorcid logoAnika Erxleben avatar Anika ErxlebenNiall Beard avatar Niall BeardEric Tvedte avatar Eric TvedteCandace Savonen avatar Candace Savonenorcid logoBérénice Batut avatar Bérénice BatutSwathi Nataraj avatar Swathi Natarajorcid logoMateo Boudet avatar Mateo Boudetorcid logoNicola Soranzo avatar Nicola SoranzoRobert Meller avatar Robert MellerWilliam Durand avatar William Durandorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoColine Royaux avatar Coline Royauxorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMehmet Tekman avatar Mehmet Tekmanorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa MüllerJoachim Wolff avatar Joachim WolffEkaterina Polkh avatar Ekaterina Polkhorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoErwan Corre avatar Erwan CorreKatherine Cox avatar Katherine Coxorcid logoAnup Kumar avatar Anup Kumarorcid logoClea Siguret avatar Clea SiguretElizabeth Humphries avatar Elizabeth HumphriesMatthias Bernt avatar Matthias Berntorcid logoStéphanie Robin avatar Stéphanie RobinSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura LeroiFrederick Tan avatar Frederick TanAva Hoffman avatar Ava Hoffmanorcid logoBjörn Grüning avatar Björn GrüningNatalie Kucher avatar Natalie Kucherorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoCameron Hyde avatar Cameron Hydeorcid logoMaria Doyle avatar Maria Doyleorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoDeepti Varshney avatar Deepti VarshneyVerena Moosmann avatar Verena Moosmann

Funding

These individuals or organisations provided funding support for the development of this resource

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BeYond-COVID
BY-COVID is an EC funded project that tackles the data challenges that can hinder effective pandemic response. This project has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement № 101046203 (BY-COVID)
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NHGRI GDS Community Network
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NHGRI ANVIL
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MAdLand
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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Australian BioCommons
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NIH
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DataPLANT
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ABRomics
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The University of Melbourne
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Melbourne Bioinformatics