10x

Tutorials covering 10x

Material

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Single Cell

Lesson	Slides	Hands-on	Recordings	Input dataset	Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R) 10x paper-replication MIGHTS jupyter-notebook tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Pre-processing of 10X Single-Cell ATAC-seq Datasets 10x epigenetics tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Pre-processing of 10X Single-Cell RNA Datasets 10x tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (May 2023) - 19m video Tutorial (March 2021) - 5m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (May 2023) - 19m video Tutorial (March 2021) - 5m video View All
Clustering 3K PBMCs with Scanpy 10x plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (September 2024) - 1h39m video Tutorial (March 2021) - 45m video View All	plain text Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages Plain text slides	tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (September 2024) - 1h39m video Tutorial (March 2021) - 45m video View All
Single-cell ATAC-seq standard processing with SnapATAC2 10x epigenetics single-cell tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages
Clustering 3K PBMCs with Seurat 10x tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages video video Tutorial (April 2025) - 2h11m video View All		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages	video video Tutorial (April 2025) - 2h11m video View All
Multi-sample batch correction with Harmony and SnapATAC2 10x epigenetics tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages		tutorial Toggle Dropdown Automatic translations Deutsch Español 中文 Français 日本語 Português العربية Italiano More Languages

Contributors

This material was contributed to by:

Anthony Bretaudeau

Björn Grüning

Cristóbal Gallardo

Marius van den Beek

Pavankumar Videm

Saskia Hiltemann

Bérénice Batut

Daniel Blankenberg

Hans-Rudolf Hotz

Diana Chiang Jurado

Amirhossein Naghsh Nilchi

Funding

These individuals or organisations provided funding support for the development of this resource

EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.