10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication 10x
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics
Batch Correction and Integration with Seurat or Scanpy
10x

Contributors

This material was contributed to by:

Pablo Moreno avatar Pablo Morenoorcid logoWendi Bacon avatar Wendi Baconorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoArmin Dadras avatar Armin Dadrasorcid logoHelena Rasche avatar Helena RascheMehmet Tekman avatar Mehmet Tekmanorcid logoNate Coraor avatar Nate Coraororcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoMarisa Loach avatar Marisa Loachorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTimon Schlegel avatar Timon Schlegelorcid logoNicola Soranzo avatar Nicola SoranzoDonny Vrins avatar Donny Vrinsorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMartin Čech avatar Martin Čechorcid logoBjörn Grüning avatar Björn GrüningMarius van den Beek avatar Marius van den Beekorcid logoTeresa Müller avatar Teresa Müllerorcid logoJulia Jakiela avatar Julia Jakielaorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

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BioFAIR
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.NBI
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de.KCD
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ELIXIR Europe
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087