10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal GallardoPablo Moreno avatar Pablo Morenoorcid logoBérénice Batut avatar Bérénice Batutorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoNate Coraor avatar Nate Coraororcid logoMarisa Loach avatar Marisa Loachorcid logoTeresa Müller avatar Teresa Müllerorcid logoWendi Bacon avatar Wendi Baconorcid logoHelena Rasche avatar Helena Rascheorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoJulia Jakiela avatar Julia Jakielaorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTimon Schlegel avatar Timon Schlegelorcid logoMartin Čech avatar Martin Čechorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoArmin Dadras avatar Armin DadrasMehmet Tekman avatar Mehmet Tekmanorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoBjörn Grüning avatar Björn GrüningDonny Vrins avatar Donny VrinsMarius van den Beek avatar Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.KCD
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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UFR
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de.NBI
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.