10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication 10x
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics
Batch Correction and Integration with Seurat or Scanpy
10x
Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium
single-cell spatial-transcriptomics xenium melanoma 10x

Contributors

This material was contributed to by:

orcid logoNate Coraor avatar Nate Coraororcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoMyrthe van Baardwijk avatar Myrthe van Baardwijkorcid logoPavankumar Videm avatar Pavankumar VidemDonny Vrins avatar Donny Vrinsorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMarisa Loach avatar Marisa Loachorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoKrzysztof Poterlowicz avatar Krzysztof PoterlowiczPablo Moreno avatar Pablo Morenoorcid logoTeresa Müller avatar Teresa Müllerorcid logoMartin Čech avatar Martin Čechorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMarius van den Beek avatar Marius van den Beekorcid logoHelena Rasche avatar Helena Rascheorcid logoArmin Dadras avatar Armin Dadrasorcid logoWendi Bacon avatar Wendi Baconorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoBjörn Grüning avatar Björn Grüningorcid logoTimon Schlegel avatar Timon SchlegelMehmet Tekman avatar Mehmet Tekman

Funding

These individuals or organisations provided funding support for the development of this resource

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de.NBI
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UFR
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de.KCD
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ELIXIR Europe
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BioFAIR
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.