10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoHelena Rasche avatar Helena Rascheorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMarisa Loach avatar Marisa Loachorcid logoArmin Dadras avatar Armin Dadrasorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoWendi Bacon avatar Wendi Baconorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoTimon Schlegel avatar Timon Schlegelorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTeresa Müller avatar Teresa Müllerorcid logoBjörn Grüning avatar Björn Grüningorcid logoBérénice Batut avatar Bérénice Batutorcid logoMartin Čech avatar Martin Čechorcid logoJulia Jakiela avatar Julia JakielaMehmet Tekman avatar Mehmet TekmanMarius van den Beek avatar Marius van den BeekPablo Moreno avatar Pablo Morenoorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoCristóbal Gallardo avatar Cristóbal GallardoDonny Vrins avatar Donny Vrinsorcid logoNate Coraor avatar Nate Coraor

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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de.KCD
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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de.NBI