10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

Pablo Moreno avatar Pablo MorenoMarius van den Beek avatar Marius van den BeekMehmet Tekman avatar Mehmet Tekmanorcid logoMartin Čech avatar Martin Čechorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNate Coraor avatar Nate Coraororcid logoBjörn Grüning avatar Björn Grüningorcid logoHans-Rudolf Hotz avatar Hans-Rudolf Hotzorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoArmin Dadras avatar Armin Dadrasorcid logoJulia Jakiela avatar Julia Jakielaorcid logoBérénice Batut avatar Bérénice Batutorcid logoDiana Chiang Jurado avatar Diana Chiang Juradoorcid logoTimon Schlegel avatar Timon Schlegelorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoTeresa Müller avatar Teresa Müllerorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoMarisa Loach avatar Marisa Loachorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiDonny Vrins avatar Donny Vrinsorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoHelena Rasche avatar Helena Rascheorcid logoNicola Soranzo avatar Nicola Soranzo

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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de.NBI
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de.KCD
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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UFR
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.