10x

Tutorials covering 10x

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Pre-processing of 10X Single-Cell RNA Datasets
10x
Clustering 3K PBMCs with Scanpy
10x
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication 10x
Clustering 3K PBMCs with Seurat
10x
Multi-sample batch correction with Harmony and SnapATAC2
10x epigenetics

Contributors

This material was contributed to by:

orcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTimon Schlegel avatar Timon Schlegelorcid logoBjörn Grüning avatar Björn Grüningorcid logoHans-Rudolf Hotz avatar Hans-Rudolf HotzDonny Vrins avatar Donny Vrinsorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa Müllerorcid logoDaniel Blankenberg avatar Daniel Blankenbergorcid logoBérénice Batut avatar Bérénice BatutMarius van den Beek avatar Marius van den Beekorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoJulia Jakiela avatar Julia Jakielaorcid logoNate Coraor avatar Nate Coraororcid logoMartin Čech avatar Martin Čechorcid logoArmin Dadras avatar Armin Dadrasorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoDiana Chiang Jurado avatar Diana Chiang JuradoMehmet Tekman avatar Mehmet Tekmanorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoMarisa Loach avatar Marisa LoachPablo Moreno avatar Pablo Morenoorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnthony Bretaudeau avatar Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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ELIXIR Europe
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UFR
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de.KCD
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de.NBI