Variant Analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced


Before diving into this topic, we recommend you to have a look at:


Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Introduction to Variant analysis slides
Calling variants in diploid systems tutorial zenodo_link workflow
Calling variants in non-diploid systems
tutorial zenodo_link interactive_tour
Exome sequencing data analysis tutorial zenodo_link workflow
Identification of somatic and germline variants from tumor and normal sample pairs tutorial zenodo_link
Mapping and molecular identification of phenotype-causing mutations tutorial zenodo_link workflow interactive_tour
Microbial Variant Calling
tutorial zenodo_link workflow interactive_tour

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.


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