metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoYvan Le Bras avatar Yvan Le BrasEric Coissac avatar Eric Coissacorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoLinelle Abueg avatar Linelle AbuegIgor Makunin avatar Igor Makuninorcid logoColine Royaux avatar Coline RoyauxMatthias Bernt avatar Matthias BerntMarie Josse avatar Marie JosseOlivier Norvez avatar Olivier NorvezJohn Beliveau avatar John Beliveauorcid logoTristan Reynolds avatar Tristan ReynoldsFrédéric Boyer avatar Frédéric Boyerorcid logoAnna Syme avatar Anna Symeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoBérénice Batut avatar Bérénice Batutorcid logoPaul Zierep avatar Paul Ziereporcid logoBert Droesbeke avatar Bert DroesbekeNiall Beard avatar Niall BeardWilliam Durand avatar William Durandorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoSantino Faack avatar Santino Faackorcid logoCristóbal Gallardo avatar Cristóbal GallardoMichael Thang avatar Michael Thangorcid logoClea Siguret avatar Clea Siguretorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDave Clements avatar Dave Clements

Funding

These individuals or organisations provided funding support for the development of this resource

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PNDB
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Melbourne Bioinformatics
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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The University of Melbourne