metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoDave Clements avatar Dave Clementsorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoPaul Zierep avatar Paul Ziereporcid logoAnna Syme avatar Anna Symeorcid logoColine Royaux avatar Coline Royauxorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSantino Faack avatar Santino FaackFrédéric Boyer avatar Frédéric BoyerNiall Beard avatar Niall Beardorcid logoLinelle Abueg avatar Linelle Abuegorcid logoMatthias Bernt avatar Matthias BerntIgor Makunin avatar Igor Makuninorcid logoBjörn Grüning avatar Björn Grüningorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoMarie Josse avatar Marie JosseOlivier Norvez avatar Olivier Norvezorcid logoCristóbal Gallardo avatar Cristóbal GallardoJohn Beliveau avatar John BeliveauEric Coissac avatar Eric Coissacorcid logoBérénice Batut avatar Bérénice BatutMichael Thang avatar Michael Thangorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoHelena Rasche avatar Helena RascheWilliam Durand avatar William Durandorcid logoClea Siguret avatar Clea Siguretorcid logoNicola Soranzo avatar Nicola Soranzo

Funding

These individuals or organisations provided funding support for the development of this resource

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The University of Melbourne
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Melbourne Bioinformatics
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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PNDB