metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

Eric Coissac avatar Eric Coissacorcid logoBérénice Batut avatar Bérénice BatutWilliam Durand avatar William Durandorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoLinelle Abueg avatar Linelle Abuegorcid logoPaul Zierep avatar Paul ZierepFrédéric Boyer avatar Frédéric BoyerMatthias Bernt avatar Matthias Berntorcid logoClea Siguret avatar Clea Siguretorcid logoBjörn Grüning avatar Björn Grüningorcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoAnne Fouilloux avatar Anne FouillouxOlivier Norvez avatar Olivier Norvezorcid logoHelena Rasche avatar Helena RascheIgor Makunin avatar Igor Makuninorcid logoColine Royaux avatar Coline Royauxorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoCristóbal Gallardo avatar Cristóbal GallardoJohn Beliveau avatar John BeliveauMarie Josse avatar Marie Josseorcid logoAnna Syme avatar Anna Symeorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoSantino Faack avatar Santino FaackMichael Thang avatar Michael ThangNiall Beard avatar Niall Beardorcid logoDave Clements avatar Dave Clements

Funding

These individuals or organisations provided funding support for the development of this resource

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Melbourne Bioinformatics
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The University of Melbourne
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Australian BioCommons
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PNDB
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.