metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBérénice Batut avatar Bérénice Batutorcid logoSantino Faack avatar Santino FaackOlivier Norvez avatar Olivier Norvezorcid logoDave Clements avatar Dave Clementsorcid logoPaul Zierep avatar Paul Ziereporcid logoTristan Reynolds avatar Tristan Reynoldsorcid logoHelena Rasche avatar Helena RascheIgor Makunin avatar Igor Makuninorcid logoColine Royaux avatar Coline RoyauxJohn Beliveau avatar John Beliveauorcid logoClea Siguret avatar Clea Siguretorcid logoNicola Soranzo avatar Nicola SoranzoEric Coissac avatar Eric Coissacorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnna Syme avatar Anna Symeorcid logoLinelle Abueg avatar Linelle AbuegMarie Josse avatar Marie JosseNiall Beard avatar Niall BeardMichael Thang avatar Michael Thangorcid logoBjörn Grüning avatar Björn Grüningorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoSaskia Hiltemann avatar Saskia HiltemannFrédéric Boyer avatar Frédéric BoyerMatthias Bernt avatar Matthias Berntorcid logoAnne Fouilloux avatar Anne FouillouxWilliam Durand avatar William Durand

Funding

These individuals or organisations provided funding support for the development of this resource

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PNDB
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The University of Melbourne
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Melbourne Bioinformatics
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Australian BioCommons
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.