metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice Batutorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnna Syme avatar Anna SymeEric Coissac avatar Eric Coissacorcid logoClea Siguret avatar Clea SiguretIgor Makunin avatar Igor Makuninorcid logoColine Royaux avatar Coline Royauxorcid logoPaul Zierep avatar Paul Ziereporcid logoLinelle Abueg avatar Linelle Abuegorcid logoSantino Faack avatar Santino Faackorcid logoDave Clements avatar Dave Clementsorcid logoSaskia Hiltemann avatar Saskia HiltemannWilliam Durand avatar William DurandMarie Josse avatar Marie JosseFrédéric Boyer avatar Frédéric BoyerMichael Thang avatar Michael Thangorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoAnne Fouilloux avatar Anne FouillouxOlivier Norvez avatar Olivier Norvezorcid logoBjörn Grüning avatar Björn GrüningNiall Beard avatar Niall Beardorcid logoHelena Rasche avatar Helena Rascheorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoTristan Reynolds avatar Tristan ReynoldsMatthias Bernt avatar Matthias BerntJohn Beliveau avatar John Beliveau

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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PNDB
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Australian BioCommons
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The University of Melbourne
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Melbourne Bioinformatics