metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

Niall Beard avatar Niall BeardMarie Josse avatar Marie Josseorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoColine Royaux avatar Coline Royauxorcid logoHelena Rasche avatar Helena Rascheorcid logoLinelle Abueg avatar Linelle AbuegIgor Makunin avatar Igor Makuninorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoClea Siguret avatar Clea SiguretOlivier Norvez avatar Olivier Norvezorcid logoPaul Zierep avatar Paul Ziereporcid logoBjörn Grüning avatar Björn GrüningMichael Thang avatar Michael ThangWilliam Durand avatar William Durandorcid logoSantino Faack avatar Santino Faackorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoBérénice Batut avatar Bérénice BatutMatthias Bernt avatar Matthias Berntorcid logoDave Clements avatar Dave ClementsJohn Beliveau avatar John Beliveauorcid logoTristan Reynolds avatar Tristan ReynoldsFrédéric Boyer avatar Frédéric Boyerorcid logoDeepti Varshney avatar Deepti VarshneyEric Coissac avatar Eric Coissacorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoAnna Syme avatar Anna Symeorcid logoCristóbal Gallardo avatar Cristóbal Gallardo

Funding

These individuals or organisations provided funding support for the development of this resource

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PNDB
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Melbourne Bioinformatics
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Australian BioCommons
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The University of Melbourne
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.