metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn GrüningMatthias Bernt avatar Matthias Berntorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoSantino Faack avatar Santino Faackorcid logoBert Droesbeke avatar Bert Droesbekeorcid logoLinelle Abueg avatar Linelle AbuegFrédéric Boyer avatar Frédéric Boyerorcid logoNicola Soranzo avatar Nicola SoranzoOlivier Norvez avatar Olivier Norvezorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoTristan Reynolds avatar Tristan ReynoldsIgor Makunin avatar Igor MakuninMichael Thang avatar Michael ThangWilliam Durand avatar William Durandorcid logoAnna Syme avatar Anna Symeorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoColine Royaux avatar Coline RoyauxEric Coissac avatar Eric CoissacMarie Josse avatar Marie Josseorcid logoDave Clements avatar Dave Clementsorcid logoPaul Zierep avatar Paul Ziereporcid logoClea Siguret avatar Clea Siguretorcid logoHelena Rasche avatar Helena RascheNiall Beard avatar Niall Beardorcid logoDeepti Varshney avatar Deepti VarshneyJohn Beliveau avatar John Beliveau

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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PNDB
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Australian BioCommons
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The University of Melbourne
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Melbourne Bioinformatics