metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoPaul Zierep avatar Paul ZierepEric Coissac avatar Eric CoissacMarie Josse avatar Marie Josseorcid logoCristóbal Gallardo avatar Cristóbal GallardoIgor Makunin avatar Igor MakuninMichael Thang avatar Michael Thangorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoHelena Rasche avatar Helena Rascheorcid logoBert Droesbeke avatar Bert DroesbekeNiall Beard avatar Niall BeardMatthias Bernt avatar Matthias Berntorcid logoColine Royaux avatar Coline RoyauxOlivier Norvez avatar Olivier Norvezorcid logoBjörn Grüning avatar Björn Grüningorcid logoDave Clements avatar Dave ClementsJohn Beliveau avatar John BeliveauWilliam Durand avatar William Durandorcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoTristan Reynolds avatar Tristan ReynoldsFrédéric Boyer avatar Frédéric Boyerorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoAnna Syme avatar Anna Symeorcid logoBérénice Batut avatar Bérénice Batutorcid logoLinelle Abueg avatar Linelle Abuegorcid logoSantino Faack avatar Santino Faackorcid logoClea Siguret avatar Clea Siguret

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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PNDB
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Melbourne Bioinformatics
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Australian BioCommons
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The University of Melbourne