metabarcoding

Tutorials covering metabarcoding

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Metabarcoding/eDNA through Obitools
genetic composition EBV class community composition EBV class EBV dataset EBV workflow eDNA metabarcoding biodiversity
Taxonomic Analysis of eDNA
biodiversity metabarcoding

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
16S Microbial analysis with Nanopore data
metabarcoding 16S nanopore microgalaxy plants
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
metabarcoding 16S microgalaxy
QIIME 2 Cancer Microbiome Intervention
metabarcoding 16S taxonomic profiling diversity microgalaxy
16S Microbial Analysis with mothur (extended)
metabarcoding 16S microgalaxy
16S Microbial Analysis with mothur (short)
metabarcoding 16S microgalaxy

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTristan Reynolds avatar Tristan ReynoldsOlivier Norvez avatar Olivier Norvezorcid logoLinelle Abueg avatar Linelle Abuegorcid logoClea Siguret avatar Clea Siguretorcid logoSaskia Hiltemann avatar Saskia HiltemannEric Coissac avatar Eric Coissacorcid logoPaul Zierep avatar Paul Ziereporcid logoNicola Soranzo avatar Nicola Soranzoorcid logoHelena Rasche avatar Helena Rascheorcid logoColine Royaux avatar Coline RoyauxMarie Josse avatar Marie JosseJohn Beliveau avatar John Beliveauorcid logoDave Clements avatar Dave ClementsWilliam Durand avatar William Durandorcid logoBjörn Grüning avatar Björn GrüningMatthias Bernt avatar Matthias BerntNiall Beard avatar Niall BeardMichael Thang avatar Michael Thangorcid logoAnne Fouilloux avatar Anne FouillouxFrédéric Boyer avatar Frédéric Boyerorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSantino Faack avatar Santino Faackorcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnna Syme avatar Anna SymeIgor Makunin avatar Igor Makuninorcid logoBert Droesbeke avatar Bert Droesbeke

Funding

These individuals or organisations provided funding support for the development of this resource

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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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PNDB
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Australian BioCommons
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Melbourne Bioinformatics
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The University of Melbourne