gmod

Tutorials covering gmod

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
InterMine integration with Galaxy
gmod intermine

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
gmod illumina bacteria microgalaxy jbrowse1
Genome annotation with Prokka
gmod prokaryote microgalaxy jbrowse1
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy
Refining Genome Annotations with Apollo (prokaryotes)
gmod prokaryote microgalaxy jbrowse1 biodiversity apollo2
Genome annotation with Funannotate
gmod eukaryote jbrowse1 biodiversity
Genome annotation with Maker (short)
gmod eukaryote maker jbrowse1
Genome annotation with Maker
gmod eukaryote jbrowse1 maker
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1

Visualisation

Lesson Slides Hands-on Recordings Input dataset Workflows
Genomic Data Visualisation with JBrowse
gmod jbrowse1

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoTeresa Müller avatar Teresa MüllerFrederick Tan avatar Frederick Tanorcid logoPaul Zierep avatar Paul Ziereporcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoStéphanie Robin avatar Stéphanie RobinTorsten Seemann avatar Torsten SeemannAnton Nekrutenko avatar Anton Nekrutenkoorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena Rascheorcid logoSimon Gladman avatar Simon GladmanYo Yehudi avatar Yo Yehudiorcid logoLaura Leroi avatar Laura Leroiorcid logoMateo Boudet avatar Mateo Boudetorcid logoAnthony Bretaudeau avatar Anthony BretaudeauSimon Bray avatar Simon BrayElizabeth Humphries avatar Elizabeth Humphriesorcid logoBérénice Batut avatar Bérénice BatutJasper Ouwerkerk avatar Jasper OuwerkerkKatherine Cox avatar Katherine CoxNatalie Kucher avatar Natalie Kucherorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningRobert Meller avatar Robert MellerNathan Dunn avatar Nathan DunnAva Hoffman avatar Ava HoffmanCandace Savonen avatar Candace Savonenorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoAnna Syme avatar Anna SymeDaniela Butano avatar Daniela Butanoorcid logoErwan Corre avatar Erwan CorreBazante Sanders avatar Bazante Sanders

Funding

These individuals or organisations provided funding support for the development of this resource

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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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ABRomics
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe
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IFB
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Avans
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NHGRI ANVIL
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NHGRI GDS Community Network