gmod

Tutorials covering gmod

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
InterMine integration with Galaxy
gmod intermine

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
gmod illumina bacteria microgalaxy jbrowse1
Genome annotation with Prokka
gmod prokaryote microgalaxy jbrowse1
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy
Refining Genome Annotations with Apollo (prokaryotes)
gmod prokaryote microgalaxy jbrowse1 biodiversity apollo2
Genome annotation with Funannotate
gmod eukaryote jbrowse1 biodiversity
Genome annotation with Maker (short)
gmod eukaryote maker jbrowse1
Genome annotation with Maker
gmod eukaryote jbrowse1 maker
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1

Visualisation

Lesson Slides Hands-on Recordings Input dataset Workflows
Genomic Data Visualisation with JBrowse
gmod jbrowse1

Contributors

This material was contributed to by:

orcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoAnna Syme avatar Anna SymeJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSimon Gladman avatar Simon Gladmanorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoPaul Zierep avatar Paul ZierepAva Hoffman avatar Ava HoffmanCandace Savonen avatar Candace Savonenorcid logoLaura Leroi avatar Laura LeroiAnton Nekrutenko avatar Anton Nekrutenkoorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAnthony Bretaudeau avatar Anthony BretaudeauNatalie Kucher avatar Natalie KucherBazante Sanders avatar Bazante SandersNathan Dunn avatar Nathan Dunnorcid logoBjörn Grüning avatar Björn Grüningorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoMiaomiao Zhou avatar Miaomiao ZhouRobert Meller avatar Robert MellerFrederick Tan avatar Frederick TanElizabeth Humphries avatar Elizabeth Humphriesorcid logoAlexandre Cormier avatar Alexandre CormierTorsten Seemann avatar Torsten SeemannDaniela Butano avatar Daniela Butanoorcid logoBérénice Batut avatar Bérénice BatutYo Yehudi avatar Yo YehudiSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoMateo Boudet avatar Mateo Boudetorcid logoTeresa Müller avatar Teresa Müllerorcid logoErwan Corre avatar Erwan CorreKatherine Cox avatar Katherine Cox

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ABRomics
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NHGRI ANVIL
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Avans
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IFB
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NHGRI GDS Community Network