gmod

Tutorials covering gmod

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
InterMine integration with Galaxy
gmod intermine

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
gmod illumina bacteria microgalaxy jbrowse1
Genome annotation with Prokka
gmod prokaryote microgalaxy jbrowse1
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy
Refining Genome Annotations with Apollo (prokaryotes)
gmod prokaryote microgalaxy jbrowse1 apollo2
Genome annotation with Funannotate
gmod eukaryote jbrowse1
Genome annotation with Maker (short)
gmod eukaryote maker jbrowse1
Genome annotation with Maker
gmod eukaryote jbrowse1 maker
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1

Visualisation

Lesson Slides Hands-on Recordings Input dataset Workflows
Genomic Data Visualisation with JBrowse
gmod jbrowse1

Contributors

This material was contributed to by:

orcid logoLaura Leroi avatar Laura Leroiorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoErwan Corre avatar Erwan CorreCandace Savonen avatar Candace Savonenorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoBjörn Grüning avatar Björn GrüningJasper Ouwerkerk avatar Jasper OuwerkerkElizabeth Humphries avatar Elizabeth Humphriesorcid logoMateo Boudet avatar Mateo BoudetAva Hoffman avatar Ava Hoffmanorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoTeresa Müller avatar Teresa Müllerorcid logoPaul Zierep avatar Paul ZierepYo Yehudi avatar Yo YehudiNathan Dunn avatar Nathan DunnBazante Sanders avatar Bazante Sandersorcid logoStéphanie Robin avatar Stéphanie RobinNatalie Kucher avatar Natalie KucherRobert Meller avatar Robert MellerTorsten Seemann avatar Torsten Seemannorcid logoHelena Rasche avatar Helena RascheKatherine Cox avatar Katherine CoxDaniela Butano avatar Daniela Butanoorcid logoAlexandre Cormier avatar Alexandre CormierFrederick Tan avatar Frederick Tanorcid logoAnna Syme avatar Anna SymeAnton Nekrutenko avatar Anton Nekrutenkoorcid logoBérénice Batut avatar Bérénice Batutorcid logoSimon Gladman avatar Simon Gladmanorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoJonathan Kreplak avatar Jonathan KreplakSimon Bray avatar Simon Bray

Funding

These individuals or organisations provided funding support for the development of this resource

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NHGRI GDS Community Network
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ABRomics
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Avans
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IFB
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NHGRI ANVIL
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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ELIXIR Europe