gmod

Tutorials covering gmod

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Making sense of a newly assembled genome
gmod prokaryote microgalaxy jbrowse1

Using Galaxy and Managing your Data

Lesson Slides Hands-on Recordings Input dataset Workflows
InterMine integration with Galaxy
gmod intermine

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Bacterial Genome Annotation
gmod illumina bacteria microgalaxy jbrowse1
Genome annotation with Prokka
gmod prokaryote microgalaxy jbrowse1
Identification of AMR genes in an assembled bacterial genome
gmod illumina amr one-health jbrowse1 microgalaxy
Refining Genome Annotations with Apollo (prokaryotes)
gmod prokaryote microgalaxy jbrowse1 biodiversity apollo2
Genome annotation with Funannotate
gmod eukaryote jbrowse1 biodiversity
Genome annotation with Maker (short)
gmod eukaryote maker jbrowse1
Genome annotation with Maker
gmod eukaryote jbrowse1 maker
Refining Genome Annotations with Apollo (eukaryotes)
gmod eukaryote cyoa jbrowse1 apollo2 biodiversity

Sequence analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Microbial Variant Calling
prokaryote microgalaxy gmod jbrowse1

Visualisation

Lesson Slides Hands-on Recordings Input dataset Workflows
Genomic Data Visualisation with JBrowse
gmod jbrowse1

Contributors

This material was contributed to by:

Anton Nekrutenko avatar Anton NekrutenkoYo Yehudi avatar Yo Yehudiorcid logoMiaomiao Zhou avatar Miaomiao Zhouorcid logoAnthony Bretaudeau avatar Anthony BretaudeauDaniela Butano avatar Daniela ButanoCandace Savonen avatar Candace SavonenSimon Bray avatar Simon Brayorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoBjörn Grüning avatar Björn Grüningorcid logoDelphine Lariviere avatar Delphine LariviereRobert Meller avatar Robert Mellerorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoErwan Corre avatar Erwan Correorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoLaura Leroi avatar Laura LeroiElizabeth Humphries avatar Elizabeth HumphriesBazante Sanders avatar Bazante Sandersorcid logoTeresa Müller avatar Teresa MüllerNatalie Kucher avatar Natalie Kucherorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlexandre Cormier avatar Alexandre CormierKatherine Cox avatar Katherine Coxorcid logoStéphanie Robin avatar Stéphanie RobinTorsten Seemann avatar Torsten Seemannorcid logoHelena Rasche avatar Helena Rascheorcid logoAnna Syme avatar Anna Symeorcid logoMateo Boudet avatar Mateo Boudetorcid logoPaul Zierep avatar Paul ZierepJasper Ouwerkerk avatar Jasper OuwerkerkAva Hoffman avatar Ava HoffmanNathan Dunn avatar Nathan DunnFrederick Tan avatar Frederick Tanorcid logoSimon Gladman avatar Simon Gladman

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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Avans
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ABRomics
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NHGRI GDS Community Network
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Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
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EuroScienceGateway
EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.
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IFB
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NHGRI ANVIL