Gallantries: Bridging Training Communities in Life Science, Environment and Health

Members

These individuals have noted that they are affiliated in some way with this organisation. This list is non-exhaustive, and randomly ordered.

Fotis E. Psomopoulos

Bérénice Batut

Anthony Bretaudeau

Former Members

These individuals have noted that they previously were affiliated in some way with this organisation. This list is non-exhaustive.

Saskia Hiltemann

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Tutorials

Slides

Visualisation / Circos 💵
Assembly / An introduction to get started in genome assembly and annotation 💵
Sequence analysis / Mapping 💵
Sequence analysis / Quality Control 💵
Genome Annotation / Refining Genome Annotations with Apollo 💵

Learning Pathways

Events

News

New Topic: Data Science Survival Kit

12 October 2021

As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. This topic will include tutorials covering things such as:

gtn infrastructure new topic data-science

Support for annotating Funding Agencies

14 December 2021

The Galaxy Training Network will now support annotating Funding Agencies on training materials. This is part of our ongoing effort to better annotate how people are contributing to the GTN and recognise all of the sources of contribution.

new-feature contributing

Image showing content from a tutorial, rendered as an rmarkdown html via knitting. A table of contents appears on the left, and code and outputs on the right.

New Feature: Automatic RMarkdown

28 January 2022

Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown! Check out an example material. Here we take the content of the tutorial, written like normal GTN markdown, and we automatically convert it to Jupyter Notebooks and now RMarkdown documents! Check out the documentation on how to setup your tutorials to support this.

gtn infrastructure new feature contributing

Gif showing a user switching between two branches of a tutorial

New Tutorial Feature: Choose Your Own Tutorial

12 April 2022

It has been a long discussed feature within the GTN Tutorial Author Community: how can we provide trainees with choice in their tutorials, and how can we as trainers not duplicate large tutorials just to show a slightly different path at one point?

gtn infrastructure new feature tutorial authors contributing

What are the most used tools in the GTN?

8 February 2023

Did you ever wonder which was the number one most used tool in the GTN? There is a new page of Top Tools where we list all of the top tools in the GTN, and which tutorials use them. We guessed “upload1”, but it seems like not every author annotates that step explicitly in their tutorial, and of course it doesn’t appear in the workflows which we also scan to create this tool listing.

new feature gtn contributing community

New Feature: Trainer Directory! (Add yourself today!)

21 March 2023

Numerous other training groups keep “Trainer Directories” as a way to help students meet trainers in their area, especially for hosting workshops for their local community. There have been a handful of attempts at this in the past, both in galaxyproject/galaxy-maps and in a Google Map on the GTN homepage.

new feature community building capacity building contributing

a graphic depicting a winding path from a start symbol to a trophy, with tutorials along the way

New Feature: Learning Pathways!

13 April 2023

Introducing Learning Pathways in the GTN! Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge step by step.

new feature contributing

Screenshot of the GTN Video Library showing a tutorial recording with a large youtube player and extensive metadata about who created the video (Natalie Kucher) and when, how long, etc.

GTN Video Library 2.0: 107 hours of learning across 154 videos

14 June 2024

Many GTN tutorials already have recordings. These recordings were made by members of the community for a variety of (online) training events. Up until now, this video library were part of the Gallantries Project. We have now integrated this video library directly into the GTN, and made it even easier to add video recordings to GTN tutorials or slide decks! Just use a Google Form to submit your video recordings!

gtn contributing teaching community

External Links

Website: https://www.erasmusplus.nl

Funding information
Funding body: Erasmus+ Programme
Grant ID: 2020-1-NL01-KA203-064717

Favourite Topics

Favourite Formats

Stats for materials contributed to by Gallantries: Bridging Training Communities in Life Science, Environment and Health