One Health

One Health is unified approach that aims to sustainably balance the health of humans, animals, and ecosystems, as all of the health of each of these groups is closely interlinked.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Genome Assembly of MRSA using Illumina MiSeq Data
illumina assembly amr one-health

Computational chemistry

Lesson Slides Hands-on Recordings Input dataset Workflows
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health

Evolution

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying tuberculosis transmission links: from SNPs to transmission clusters
prokaryote one-health microgalaxy
Tree thinking for tuberculosis evolution and epidemiology
prokaryote one-health phylogenetics microgalaxy

Variant Analysis

Lesson Slides Hands-on Recordings Input dataset Workflows
Avian influenza viral strain analysis from gene segment sequencing data
virology one-health
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health
M. tuberculosis Variant Analysis
prokaryote one-health microgalaxy
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health
Pox virus genome analysis from tiled-amplicon sequencing data
virology one-health

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Editorial Board

This material is reviewed by our Editorial Board:

orcid logoWolfgang Maier avatar Wolfgang Maierorcid logoPeter van Heusden avatar Peter van Heusdenorcid logoTomas Klingström avatar Tomas Klingströmorcid logoHelena Rasche avatar Helena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoTomas Klingström avatar Tomas KlingströmGalo A. Goig avatar Galo A. Goigorcid logoDave Clements avatar Dave Clementsorcid logoSaskia Hiltemann avatar Saskia HiltemannDaniela Brites avatar Daniela BritesBazante Sanders avatar Bazante Sandersorcid logoSimon Gladman avatar Simon GladmanSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena RascheAvans Hogeschool avatar Avans Hogeschoolorcid logoWolfgang Maier avatar Wolfgang Maierorcid logoMiaomiao Zhou avatar Miaomiao ZhouChristoph Stritt avatar Christoph Strittorcid logoBérénice Batut avatar Bérénice Batutorcid logoPeter van Heusden avatar Peter van HeusdenMarius van den Beek avatar Marius van den BeekAnton Nekrutenko avatar Anton NekrutenkoThoba Lose avatar Thoba Loseorcid logoDaniel Blankenberg avatar Daniel Blankenberg

Funders

This material was funded by:

BeYond-COVID avatar BeYond-COVIDAddressing the dual emerging threats of African Swine Fever and Lumpy Skin Disease in Europe avatar DEFENDELIXIR-CONVERGE avatar ELIXIR-CONVERGE