Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

Material

Core

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Introduction to Galaxy
slides
A short introduction to Galaxy
level level level
tutorial zenodo_link workflow
From peaks to genes
level level level
tutorial zenodo_link
Galaxy 101
level level level
tutorial
Galaxy 101 for everyone
level level level
tutorial zenodo_link workflow
Introduction to Genomics and Galaxy
level level level
tutorial workflow
NGS data logistics
tutorial
Options for using Galaxy
slides

R

These lessons focus on coding in R, using Galaxy analysis outputs as their basis.

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Advanced R in Galaxy
level level level
tutorial
R basics in Galaxy
level level level
tutorial

Other


Assorted other tutorials

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
IGV Introduction
tutorial

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -d -p 8080:80 quay.io/galaxy/introduction-training

It will launch a flavored Galaxy instance available on http://localhost:8080.

Maintainers

This material is maintained by:

Jennifer Hillman-JacksonJennifer Hillman-Jackson, Dave ClementsDave Clements

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Andrea BagnacaniAndrea Bagnacani, Bérénice BatutBérénice Batut, Saskia HiltemannSaskia Hiltemann, Anne PajonAnne Pajon, Nicola SoranzoNicola Soranzo, Helena RascheHelena Rasche, Christopher BarnettsterChristopher Barnettster, Michele MaroniMichele Maroni, Anne FouillouxAnne Fouilloux, Nadia GouéNadia Goué, Olha NahornaOlha Nahorna, Dave ClementsDave Clements, Anna SymeAnna Syme, Fotis E. PsomopoulosFotis E. Psomopoulos, Toby HodgesToby Hodges, Clemens BlankClemens Blank, Björn GrüningBjörn Grüning, Dilmurat YusufDilmurat Yusuf, Sarah PeterSarah Peter, Anton NekrutenkoAnton Nekrutenko, Joachim WolffJoachim Wolff, Anthony BretaudeauAnthony Bretaudeau