View markdown source on GitHub

A Short Introduction to Galaxy

Contributors

Questions

last_modification Published: Nov 4, 2020
last_modification Last Updated: Sep 7, 2024

What is Galaxy?

Speaker Notes

What is Galaxy?


Galaxy Logo

Data Intensive analysis for everyone

.pull-left[

]

.pull-right[ data science infographic ]

.footnote[Homepage: galaxyproject.org]

Speaker Notes


Why use Galaxy?

Galaxy resource banner

Speaker Notes


How do I use Galaxy?

Speaker Notes


Find a Galaxy server

Speaker Notes


The Galaxy Interface

Galaxy user interface

Speaker Notes


Uploading data

.pull-left[

]

.pull-right[ Galaxy upload button ]

Speaker Notes


History

.pull-left[

]

.pull-right[ expanding a dataset ]

Speaker Notes


Finding a tool

.pull-left[

.pull-right[ tool search box ]


add a tool to your favorites by clicking on the star icon

Speaker Notes


Running a tool

.pull-left[

]

.pull-right[ tool interface ]

Speaker Notes


Analysis Results

.pull-left[

.pull-right[ example tool run ]

Speaker Notes


Visualisations

Examples of 6 different visualisations in galaxy features an MSA, a couple graphs, RNA structure, and 3d visualisations of proteins

Speaker Notes


Multiple Analyses

multiple history view

Speaker Notes


Workflows

Workflow interface

Speaker Notes


Sharing

.pull-left[

.pull-right[ publish history example ]

shared data in grids

Speaker Notes


Learning Galaxy

<div class="row" style="color: var(--text-color-boxtitle)"> <div class="col-md-3"> <div class="gtn-card color-agenda"> <div class="card-title">33</div> <div class="card-text">Topics</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-tip"> <div class="card-title">434</div> <div class="card-text">Tutorials</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-handson"> <div class="card-title">19</div> <div class="card-text">Learning Paths</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-details"> <div class="card-title">458</div> <div class="card-text">FAQs</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-comment"> <div class="card-title">429</div> <div class="card-text">Contributors</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-handson"> <div class="card-title">9.4</div> <div class="card-text">Years</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-handson"> <div class="card-title">98</div> <div class="card-text">News Posts</div> </div> </div> <div class="col-md-3"> <div class="gtn-card color-handson"> <div class="card-title">200</div> <div class="card-text">Videos (135.0h)</div> </div> </div> </div>

Speaker Notes


Getting Help

Speaker Notes


Join an event

Event schedule

Speaker Notes


Key Points

Thank you!

This material is the result of a collaborative work. Thanks to the Galaxy Training Network and all the contributors! Galaxy Training Network Tutorial Content is licensed under Creative Commons Attribution 4.0 International License.