Genome Annotation
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
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Requirements
Before diving into this topic, we recommend you to have a look at:
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Introduction
Start here if you are new to genome annotation in Galaxy.
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
|
Introduction to Genome Annotation
|
Prokaryotes
Annotation of prokaryotic genomes.
Eukaryotes
Annotation of eukaryotic genomes.
Other
Assorted Tutorials
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Comparative gene analysis in unannotated genomes | |||||
| From small to large-scale genome comparison | |||||
| Pangenome analysis with Roary |
Learning Pathways
Or have a look at one of our learning pathways involving this topic. Learning pathways are sets of tutorials curated for you by community experts to form a coherent set of lessons around a topic, building up knowledge as you go. We always recommend to follow the tutorials in the order they are listed in the pathway.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Community Resources
Community Home Maintainer HomeEditorial Board
This material is reviewed by our Editorial Board:
Helena Rasche
Anthony Bretaudeau
Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!
Contributors
This material was contributed to by:
Tristan Reynolds
Delphine Lariviere
Torsten Seemann
Solenne Correard
Kenji Fujihara
Teresa Müller
Anna Syme
Deepti Varshney
Nathan Dunn
Donny Vrins
Twishi Gulati
Niklas Mayle
Jasper Ouwerkerk
Bérénice Batut
Saskia Hiltemann
Jonathan Kreplak
Anton Nekrutenko
Maria Doyle
Saim Momin
Anthony Bretaudeau
Anika Erxleben
William Durand
Paul Zierep
Ekaterina Polkh
Bazante Sanders
Cristóbal Gallardo
Mateo Boudet
Helena Rasche
Nicola Soranzo
Felicitas Kindel
Guillaume Gautreau
Simon Gladman
Laura Leroi
Alexandre Cormier
Niall Beard
Simon Bray
Vesselin Baev
Gildas Le Corguillé
Romane LIBOUBAN
Miaomiao Zhou
Hélène Chiapello
Björn Grüning
Erwan Corre
Esteban Perez-Wohlfeil
Valentin Loux
Stéphanie Robin
Funding
These individuals or organisations provided funding support for the development of this resource
