Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

Anna Syme

Jasper Ouwerkerk

Ekaterina Polkh

Helena Rasche

Björn Grüning

Teresa Müller

Tristan Reynolds

Simon Gladman

Anton Nekrutenko

Romane LIBOUBAN

Anika Erxleben

Paul Zierep

Miaomiao Zhou

Nicola Soranzo

Torsten Seemann

Mateo Boudet

Deepti Varshney

Bérénice Batut

William Durand

Erwan Corre

Bazante Sanders

Nathan Dunn

Simon Bray

Felicitas Kindel

Alexandre Cormier

Stéphanie Robin

Esteban Perez-Wohlfeil

Guillaume Gautreau

Maria Doyle

Kenji Fujihara

Hélène Chiapello

Jonathan Kreplak

Twishi Gulati

Valentin Loux

Gildas Le Corguillé

Laura Leroi

Anthony Bretaudeau

Niall Beard

Cristóbal Gallardo

Saskia Hiltemann

Delphine Lariviere

Funding

These individuals or organisations provided funding support for the development of this resource

The University of Melbourne

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

Australian BioCommons

IFB

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ELIXIR Europe

Melbourne Bioinformatics

Avans

ABRomics