paper-replication

Tutorials covering paper-replication

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
paper-replication MIGHTS
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Combining single cell datasets after pre-processing
paper-replication MIGHTS
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication
Filter, plot and explore single-cell RNA-seq data with Scanpy
paper-replication MIGHTS
Filter, plot, and explore single cell RNA-seq data with Seurat
paper-replication MIGHTS
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Inferring single cell trajectories with Scanpy
paper-replication MIGHTS
Inferring single cell trajectories with Monocle3
paper-replication MIGHTS

Contributors

This material was contributed to by:

orcid logoMorgan Howells avatar Morgan Howellsorcid logoTeresa Müller avatar Teresa Müllerorcid logoHelena Rasche avatar Helena Rascheorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoJulia Jakiela avatar Julia Jakielaorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoBjörn Grüning avatar Björn Grüningorcid logoMarisa Loach avatar Marisa LoachPablo Moreno avatar Pablo Morenoorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiMatthias Bernt avatar Matthias Berntorcid logoWendi Bacon avatar Wendi Baconorcid logoMartin Čech avatar Martin Čechorcid logoSaskia Hiltemann avatar Saskia HiltemannMehmet Tekman avatar Mehmet TekmanCamila Goclowski avatar Camila Goclowskiorcid logoBérénice Batut avatar Bérénice BatutJonathan Manning avatar Jonathan Manningorcid logoPavankumar Videm avatar Pavankumar VidemDavid López avatar David López

Funding

These individuals or organisations provided funding support for the development of this resource

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EPSRC/OU
The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087