paper-replication

Tutorials covering paper-replication

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
paper-replication MIGHTS
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Combining single cell datasets after pre-processing
paper-replication MIGHTS
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication 10x
Filter, plot and explore single-cell RNA-seq data with Scanpy
paper-replication MIGHTS
Filter, plot, and explore single cell RNA-seq data with Seurat
paper-replication MIGHTS
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Inferring single cell trajectories with Scanpy
paper-replication MIGHTS
Inferring single cell trajectories with Monocle3
paper-replication MIGHTS

Contributors

This material was contributed to by:

orcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh NilchiCamila Goclowski avatar Camila Goclowskiorcid logoMarisa Loach avatar Marisa Loachorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMorgan Howells avatar Morgan Howellsorcid logoMatthias Bernt avatar Matthias BerntMehmet Tekman avatar Mehmet Tekmanorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena RaschePablo Moreno avatar Pablo Morenoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoTeresa Müller avatar Teresa Müllerorcid logoPavankumar Videm avatar Pavankumar VidemJonathan Manning avatar Jonathan Manningorcid logoBjörn Grüning avatar Björn Grüningorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMartin Čech avatar Martin ČechDavid López avatar David López

Funding

These individuals or organisations provided funding support for the development of this resource

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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EPSRC/OU
The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University