paper-replication

Tutorials covering paper-replication

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
paper-replication MIGHTS
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Combining single cell datasets after pre-processing
paper-replication MIGHTS
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Analysis of plant scRNA-Seq Data with Scanpy
plants paper-replication
Filter, plot and explore single-cell RNA-seq data with Scanpy
paper-replication MIGHTS
Filter, plot, and explore single cell RNA-seq data with Seurat
paper-replication MIGHTS
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Inferring single cell trajectories with Scanpy
paper-replication MIGHTS
Inferring single cell trajectories with Monocle3
paper-replication MIGHTS

Contributors

This material was contributed to by:

orcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoMartin Čech avatar Martin Čechorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoWendi Bacon avatar Wendi Baconorcid logoTeresa Müller avatar Teresa Müllerorcid logoMorgan Howells avatar Morgan Howellsorcid logoHelena Rasche avatar Helena Rascheorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoJulia Jakiela avatar Julia Jakielaorcid logoBérénice Batut avatar Bérénice BatutDavid López avatar David LópezPablo Moreno avatar Pablo Morenoorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoBjörn Grüning avatar Björn GrüningMehmet Tekman avatar Mehmet TekmanMatthias Bernt avatar Matthias BerntJonathan Manning avatar Jonathan Manningorcid logoMarisa Loach avatar Marisa LoachCamila Goclowski avatar Camila Goclowskiorcid logoSaskia Hiltemann avatar Saskia Hiltemann

Funding

These individuals or organisations provided funding support for the development of this resource

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EPSRC/OU
The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087