eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoMarius van den Beek avatar Marius van den Beekorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoErwan Corre avatar Erwan CorreMarcella Sozzoni avatar Marcella Sozzoniorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoLinelle Abueg avatar Linelle Abuegorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice Batutorcid logoDelphine Lariviere avatar Delphine LariviereJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoBjörn Grüning avatar Björn Grüningorcid logoLaura Leroi avatar Laura Leroiorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnna Syme avatar Anna SymeBrandon Pickett avatar Brandon Pickettorcid logoHelena Rasche avatar Helena RascheGiulio Formenti avatar Giulio FormentiSimon Bray avatar Simon Brayorcid logoRomane LIBOUBAN avatar Romane LIBOUBANAnton Nekrutenko avatar Anton Nekrutenkoorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlexandre Cormier avatar Alexandre Cormier

Funding

These individuals or organisations provided funding support for the development of this resource