eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena Rascheorcid logoAnna Syme avatar Anna Symeorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoStéphanie Robin avatar Stéphanie RobinBrandon Pickett avatar Brandon Pickettorcid logoLaura Leroi avatar Laura LeroiJasper Ouwerkerk avatar Jasper OuwerkerkAnton Nekrutenko avatar Anton Nekrutenkoorcid logoAnthony Bretaudeau avatar Anthony BretaudeauMarius van den Beek avatar Marius van den BeekMarcella Sozzoni avatar Marcella SozzoniGiulio Formenti avatar Giulio Formentiorcid logoCristóbal Gallardo avatar Cristóbal GallardoSimon Bray avatar Simon Brayorcid logoErwan Corre avatar Erwan Correorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoTeresa Müller avatar Teresa Müllerorcid logoLinelle Abueg avatar Linelle Abuegorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoBjörn Grüning avatar Björn Grüningorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batutorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoDeepti Varshney avatar Deepti Varshney

Funding

These individuals or organisations provided funding support for the development of this resource