eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

Brandon Pickett avatar Brandon Pickettorcid logoBjörn Grüning avatar Björn Grüningorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoLaura Leroi avatar Laura Leroiorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoStéphanie Robin avatar Stéphanie RobinMarius van den Beek avatar Marius van den Beekorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoDeepti Varshney avatar Deepti VarshneyMarcella Sozzoni avatar Marcella SozzoniSimon Bray avatar Simon BrayAnton Nekrutenko avatar Anton Nekrutenkoorcid logoCristóbal Gallardo avatar Cristóbal GallardoGiulio Formenti avatar Giulio Formentiorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnna Syme avatar Anna SymeJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoTeresa Müller avatar Teresa Müllerorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoErwan Corre avatar Erwan Correorcid logoLinelle Abueg avatar Linelle Abuegorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource