eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoBérénice Batut avatar Bérénice Batutorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoTeresa Müller avatar Teresa Müllerorcid logoAnna Syme avatar Anna Symeorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoLaura Leroi avatar Laura Leroiorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBjörn Grüning avatar Björn GrüningJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoCristóbal Gallardo avatar Cristóbal GallardoMarcella Sozzoni avatar Marcella Sozzoniorcid logoDeepti Varshney avatar Deepti VarshneyAnton Nekrutenko avatar Anton Nekrutenkoorcid logoMarius van den Beek avatar Marius van den Beekorcid logoErwan Corre avatar Erwan Correorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoLinelle Abueg avatar Linelle AbuegGiulio Formenti avatar Giulio Formentiorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnthony Bretaudeau avatar Anthony BretaudeauBrandon Pickett avatar Brandon Pickettorcid logoAlex Ostrovsky avatar Alex Ostrovsky

Funding

These individuals or organisations provided funding support for the development of this resource