eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoAlex Ostrovsky avatar Alex OstrovskyAnton Nekrutenko avatar Anton Nekrutenkoorcid logoLaura Leroi avatar Laura Leroiorcid logoTeresa Müller avatar Teresa Müllerorcid logoErwan Corre avatar Erwan CorreGiulio Formenti avatar Giulio Formentiorcid logoHelena Rasche avatar Helena Rascheorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnna Syme avatar Anna SymeMarcella Sozzoni avatar Marcella Sozzoniorcid logoBérénice Batut avatar Bérénice Batutorcid logoBjörn Grüning avatar Björn GrüningJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoLinelle Abueg avatar Linelle Abuegorcid logoCristóbal Gallardo avatar Cristóbal GallardoSimon Bray avatar Simon Brayorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMarius van den Beek avatar Marius van den Beekorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoRomane LIBOUBAN avatar Romane LIBOUBANBrandon Pickett avatar Brandon Pickettorcid logoDelphine Lariviere avatar Delphine Lariviere

Funding

These individuals or organisations provided funding support for the development of this resource