eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoErwan Corre avatar Erwan Correorcid logoLinelle Abueg avatar Linelle AbuegMarcella Sozzoni avatar Marcella Sozzoniorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoTeresa Müller avatar Teresa Müllerorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoBérénice Batut avatar Bérénice Batutorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnna Syme avatar Anna SymeSimon Bray avatar Simon Brayorcid logoHelena Rasche avatar Helena Rascheorcid logoLaura Leroi avatar Laura Leroiorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBjörn Grüning avatar Björn GrüningBrandon Pickett avatar Brandon Pickettorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoRomane LIBOUBAN avatar Romane LIBOUBANGiulio Formenti avatar Giulio Formentiorcid logoJonathan Kreplak avatar Jonathan KreplakJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAnton Nekrutenko avatar Anton NekrutenkoMarius van den Beek avatar Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource