eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoAnna Syme avatar Anna SymeAnton Nekrutenko avatar Anton Nekrutenkoorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoHelena Rasche avatar Helena Rascheorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoBjörn Grüning avatar Björn GrüningBrandon Pickett avatar Brandon Pickettorcid logoLinelle Abueg avatar Linelle Abuegorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoMarius van den Beek avatar Marius van den Beekorcid logoSaskia Hiltemann avatar Saskia HiltemannGiulio Formenti avatar Giulio Formentiorcid logoCristóbal Gallardo avatar Cristóbal GallardoJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoTeresa Müller avatar Teresa Müllerorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoLaura Leroi avatar Laura Leroiorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoBérénice Batut avatar Bérénice BatutMarcella Sozzoni avatar Marcella SozzoniSimon Bray avatar Simon Brayorcid logoErwan Corre avatar Erwan Corre

Funding

These individuals or organisations provided funding support for the development of this resource