eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoBjörn Grüning avatar Björn GrüningAnton Nekrutenko avatar Anton Nekrutenkoorcid logoTeresa Müller avatar Teresa Müllerorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoAnna Syme avatar Anna Symeorcid logoHelena Rasche avatar Helena RascheSimon Bray avatar Simon Brayorcid logoAnthony Bretaudeau avatar Anthony BretaudeauBrandon Pickett avatar Brandon PickettMarius van den Beek avatar Marius van den Beekorcid logoErwan Corre avatar Erwan CorreJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoLinelle Abueg avatar Linelle AbuegGiulio Formenti avatar Giulio Formentiorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoLaura Leroi avatar Laura LeroiMarcella Sozzoni avatar Marcella Sozzoniorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoBérénice Batut avatar Bérénice Batut

Funding

These individuals or organisations provided funding support for the development of this resource