eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoCristóbal Gallardo avatar Cristóbal GallardoBrandon Pickett avatar Brandon Pickettorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoBérénice Batut avatar Bérénice Batutorcid logoDeepti Varshney avatar Deepti VarshneyMarius van den Beek avatar Marius van den Beekorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoErwan Corre avatar Erwan Correorcid logoHelena Rasche avatar Helena RascheJasper Ouwerkerk avatar Jasper OuwerkerkGiulio Formenti avatar Giulio FormentiSimon Bray avatar Simon Brayorcid logoLaura Leroi avatar Laura Leroiorcid logoLinelle Abueg avatar Linelle Abuegorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoBjörn Grüning avatar Björn GrüningMarcella Sozzoni avatar Marcella Sozzoniorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoJonathan Kreplak avatar Jonathan Kreplakorcid logoAnna Syme avatar Anna Symeorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoRomane LIBOUBAN avatar Romane LIBOUBANAnton Nekrutenko avatar Anton Nekrutenkoorcid logoTeresa Müller avatar Teresa Müller

Funding

These individuals or organisations provided funding support for the development of this resource