eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

orcid logoAnna Syme avatar Anna Symeorcid logoAlexandre Cormier avatar Alexandre CormierGiulio Formenti avatar Giulio Formentiorcid logoJonathan Kreplak avatar Jonathan KreplakSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoTeresa Müller avatar Teresa Müllerorcid logoLaura Leroi avatar Laura Leroiorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBjörn Grüning avatar Björn Grüningorcid logoLinelle Abueg avatar Linelle Abuegorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoHelena Rasche avatar Helena Rascheorcid logoErwan Corre avatar Erwan CorreAnton Nekrutenko avatar Anton NekrutenkoBrandon Pickett avatar Brandon Pickettorcid logoBérénice Batut avatar Bérénice BatutMarcella Sozzoni avatar Marcella Sozzoniorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoDelphine Lariviere avatar Delphine LariviereJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMarius van den Beek avatar Marius van den Beek

Funding

These individuals or organisations provided funding support for the development of this resource