eukaryote

Tutorials covering eukaryote

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.

Assembly

Lesson Slides Hands-on Recordings Input dataset Workflows
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Genome Annotation

Lesson Slides Hands-on Recordings Input dataset Workflows
Masking repeats with RepeatMasker
Comparative gene analysis in unannotated genomes
Genome annotation with Funannotate
Genome annotation with Maker (short)
Genome annotation with Maker
Functional annotation of protein sequences
Refining Genome Annotations with Apollo (eukaryotes)
Long non-coding RNAs (lncRNAs) annotation with FEELnc

Contributors

This material was contributed to by:

Brandon Pickett avatar Brandon Pickettorcid logoErwan Corre avatar Erwan CorreAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDelphine Lariviere avatar Delphine Lariviereorcid logoAnna Syme avatar Anna Symeorcid logoTeresa Müller avatar Teresa Müllerorcid logoHelena Rasche avatar Helena Rascheorcid logoAlex Ostrovsky avatar Alex Ostrovskyorcid logoDeepti Varshney avatar Deepti Varshneyorcid logoJonathan Kreplak avatar Jonathan KreplakGiulio Formenti avatar Giulio Formentiorcid logoBjörn Grüning avatar Björn GrüningMarius van den Beek avatar Marius van den BeekSimon Bray avatar Simon Brayorcid logoSaskia Hiltemann avatar Saskia HiltemannJasper Ouwerkerk avatar Jasper Ouwerkerkorcid logoRomane LIBOUBAN avatar Romane LIBOUBANorcid logoBérénice Batut avatar Bérénice Batutorcid logoStéphanie Robin avatar Stéphanie Robinorcid logoAlexandre Cormier avatar Alexandre Cormierorcid logoLaura Leroi avatar Laura LeroiMarcella Sozzoni avatar Marcella Sozzoniorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoLinelle Abueg avatar Linelle Abueg

Funding

These individuals or organisations provided funding support for the development of this resource