Wolfgang Maier

Affiliations

Contributions

The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.

Editorial Roles

This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.

• SARS-CoV-2
• One Health
• Variant Analysis

Tutorials

• Microbiome / Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition 📝 🧐
• Using Galaxy and Managing your Data / Automating Galaxy workflows using the command line ✍️ 🧐
• Galaxy Server administration / Data Libraries 🧐
• Galaxy Server administration / Galaxy Tool Management with Ephemeris 🧐
• Single Cell / Pre-processing of Single-Cell RNA Data ✍️
• Assembly / Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads ✍️ 🧐
• Sequence analysis / Quality Control 🧐
• Sequence analysis / Removal of human reads from SARS-CoV-2 sequencing data ✍️ 🧐
• Evolution / Tree thinking for tuberculosis evolution and epidemiology 📝 🧐
• Evolution / Identifying tuberculosis transmission links: from SNPs to transmission clusters 📝 🧐
• Proteomics / MaxQuant and MSstats for the analysis of TMT data 🧐
• Contributing to the Galaxy Training Material / Creating a new tutorial 🧐
• Contributing to the Galaxy Training Material / Running the GTN website locally using the command line 🧐
• Transcriptomics / Genome-wide alternative splicing analysis 🧐
• Transcriptomics / Reference-based RNA-Seq data analysis 🧐
• Variant Analysis / Identification of somatic and germline variants from tumor and normal sample pairs ✍️ 🧐
• Variant Analysis / Pox virus genome analysis from tiled-amplicon sequencing data ✍️ 🧐
• Variant Analysis / Mapping and molecular identification of phenotype-causing mutations ✍️ 🧐
• Variant Analysis / Exome sequencing data analysis for diagnosing a genetic disease ✍️ 🧐
• Variant Analysis / Trio Analysis using Synthetic Datasets from RD-Connect GPAP ✍️ 🧐
• Variant Analysis / From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis 📝
• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data ✍️ 🧐
• Variant Analysis / M. tuberculosis Variant Analysis 🧐
• Variant Analysis / Somatic Variant Discovery from WES Data Using Control-FREEC ✍️
• Variant Analysis / Avian influenza viral strain analysis from gene segment sequencing data ✍️ 🧐
• Introduction to Galaxy Analyses / Galaxy Basics for genomics 🧐

Slides

• Transcriptomics / Identification of non-canonical ORFs and their potential biological function 🧐

FAQs

• How do I create an account on a public Galaxy instance?
• Is it possible to use alternative tools to those proposed in the tutorial?
• Pick the right Concatenate tool
• Adding a tag
• Creating a new file
• Importing data from a data library
• Importing data from remote files
• Renaming a dataset
• Créer un nouvel history
• Creating a new history
• Renaming a history
• Select multiple datasets
• Downloading the files from the NCBI server fails or takes too long.
• Importing a workflow using the search
• Renaming workflow outputs

Video Recordings

• Variant Analysis / Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data 💬 🗣

Events

• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Workshop on high-throughput sequencing data analysis with Galaxy 🧑‍🏫
• Galaxy Training Academy 2024 🧑‍🏫

GitHub Activity

github Issues Reported

61 Merged Pull Requests

See all of the github Pull Requests and github Commits by Wolfgang Maier.

• Update to latest cutadapt interface in quality control
  transcriptomics
  sequence-analysis
• Add link to AIV reference history on Galaxy US
  variant-analysis
• BY-COVID track update
  template-and-tools
• Update pangolin version used in SARS-CoV-2 variant discovery tutorial
  variant-analysis
• Remove duplicated instructions in hands-on box
  evolution

Reviewed 32 PRs

We love our community reviewing each other's work!

• Update to latest cutadapt interface in quality control
  transcriptomics
  sequence-analysis
• Add link to AIV reference history on Galaxy US
  variant-analysis
• github [Google Form] New Recording Submission for Mutation calling, viral genome reconstruction and lineage/clade assignment
  variant-analysis
• Update pangolin version used in SARS-CoV-2 variant discovery tutorial
  variant-analysis
• Updates to TB variant analysis tutorial
  review-needed
  variant-analysis
  template-and-tools

News

External Links

Favourite Topics

Favourite Formats