Table of Contents - RDoc Documentation
Pages
- add_galaxy_instance_badges.py
- ari-gen-sample-audio.sh
- ari-make.sh
- ari-quick.sh
- ari.sh
- check-broken-boxes.py
- check-redirects.sh
- check-url-persistence.sh
- data-library-update.sh
- data_libarary_download.sh
- docker-install-tutorials.sh
- galaxy-help-news.sh
- gtn-fix.sh
- install_topic_requirements.sh
- install_tutorial_requirements.sh
- knit-automated.sh
- knit-frog.py
- knit.py
- knittingneedles.py
- lint-diffs.py
- lunr-index.js
- lunr-search.js
- mergeyaml.py
- pdf2slides.py
- prepare_docker_checks.py
- publish-archive
- schema-contributors.yaml
- schema-event-external.yaml
- schema-event.yaml
- schema-faq.yaml
- schema-grants.yaml
- schema-learning-pathway.yaml
- schema-news.yaml
- schema-organisations.yaml
- schema-quiz.yaml
- schema-requirement-external.yaml
- schema-requirement-internal.yaml
- schema-slides.yaml
- schema-topic.yaml
- schema-tutorial.yaml
- setup_training_content.py
- slides-fix.css
- social-cards.py
- supported-fetch.py
- validate-has-workflow.sh
- video-browser-recorder.js
- video-builder.py
- video-diffplayer.py
- video-extract-script.py
- video-term-demo-magic.sh
- video-term-recorder.sh
- wfh-upload.py
- yaml2json.py
Classes and Modules
- BoxIdTest
- ColourTag
- DateTime
- GTNNotebooks
- Gtn
- Gtn::Boxify
- Gtn::Contributors
- Gtn::Git
- Gtn::Images
- Gtn::Metrics
- Gtn::ModificationTimes
- Gtn::PublicationTimes
- Gtn::RoCrate
- Gtn::Scholar
- Gtn::Shortlinks
- Gtn::Supported
- Gtn::Toolshed
- Gtn::Usegalaxy
- GtnLinter
- GtnLinterTest
- Hash
- Hsluv
- IntersectionTest
- Jekyll
- Jekyll::APIGenerator
- Jekyll::Abbreviate
- Jekyll::AuthorPageGenerator
- Jekyll::BibTag
- Jekyll::Boxify
- Jekyll::CiteTag
- Jekyll::CiteUrlTag
- Jekyll::ColorPickerTag
- Jekyll::CustomLinkTag
- Jekyll::DumpSearchDataTag
- Jekyll::DurationFilter
- Jekyll::EnvironmentVariablesGenerator
- Jekyll::Figurify
- Jekyll::FileExistsTag
- Jekyll::GtnFunctions
- Jekyll::IconTag
- Jekyll::IconTagVar
- Jekyll::ImplColourTag
- Jekyll::ImplTopicFilter
- Jekyll::JsBundle
- Jekyll::JsonldFilter
- Jekyll::PlaintextSlidesGenerator
- Jekyll::RecordingPageGenerator
- Jekyll::RmarkdownGenerator
- Jekyll::SitemapGenerator2
- Jekyll::SyntheticTopicGenerator
- Jekyll::TagPageGenerator
- Jekyll::Tags
- Jekyll::Tags::SnippetIncludeTag
- Jekyll::ToolTag
- Jekyll::WorkflowPageGenerator
- Jekyll::WorkflowTag
- Object
- ReviewDogEmitter
- SchemaValidator
- TopicFilter
Methods
- ::_discover — Gtn::Git
- ::_get_image_dimensions — Gtn::Images
- ::_load_file — Gtn::Contributors
- ::add_metadata_cell — GTNNotebooks
- ::annotate_path — TopicFilter
- ::bad_tool_links — GtnLinter
- ::bad_zenodo_links — GtnLinter
- ::bib_missing_mandatory_fields — GtnLinter
- ::bin_width — Gtn::Metrics
- ::box_classes — Gtn::Boxify
- ::cache — Jekyll::GtnFunctions
- ::cache — Gtn::Git
- ::cache — Gtn::Images
- ::cache — Gtn::RoCrate
- ::cache — TopicFilter
- ::cached_command — Gtn::ModificationTimes
- ::cached_command — Gtn::PublicationTimes
- ::calculate — Gtn::Supported
- ::calculate_matrix — Gtn::Supported
- ::chase_rename — Gtn::PublicationTimes
- ::check_bad_cite — GtnLinter
- ::check_bad_heading_order — GtnLinter
- ::check_bad_icon — GtnLinter
- ::check_bad_link — GtnLinter
- ::check_bad_link_text — GtnLinter
- ::check_bad_tag — GtnLinter
- ::check_bad_trs_link — GtnLinter
- ::check_bolded_heading — GtnLinter
- ::check_dois — GtnLinter
- ::check_looks_like_heading — GtnLinter
- ::check_pmids — GtnLinter
- ::check_tool_link — GtnLinter
- ::check_useless_box_prefix — GtnLinter
- ::citation_library — GtnLinter
- ::clean_path — Gtn::ModificationTimes
- ::clean_path — Gtn::PublicationTimes
- ::code_limits — GtnLinter
- ::collate_materials — TopicFilter
- ::collect_metrics — Gtn::Metrics
- ::colour_tag — ColourTag
- ::command — Gtn::ModificationTimes
- ::command — Gtn::PublicationTimes
- ::commit_count_cache — Gtn::ModificationTimes
- ::construct_byline — GTNNotebooks
- ::convert_notebook_markdown — GTNNotebooks
- ::cyoa_branches — GtnLinter
- ::delete_text — ReviewDogEmitter
- ::discover — Gtn::Git
- ::discover_bib — Gtn::Scholar
- ::discover_caches — Gtn::ModificationTimes
- ::discover_caches — Gtn::PublicationTimes
- ::discover_faqs — Object
- ::emit_results — GtnLinter
- ::empty_alt_text — GtnLinter
- ::enable_auto_fix — GtnLinter
- ::enumerate_all — GtnLinter
- ::enumerate_lintable — GtnLinter
- ::enumerate_symlinks — GtnLinter
- ::enumerate_topics — TopicFilter
- ::enumerate_type — GtnLinter
- ::error — ReviewDogEmitter
- ::extract_workflow_tool_list — TopicFilter
- ::fetch — Gtn::Contributors
- ::fetch_contributor — Gtn::Contributors
- ::fetch_funding_url — Gtn::Contributors
- ::fetch_name — Gtn::Contributors
- ::fetch_tutorial_material — TopicFilter
- ::file_error — ReviewDogEmitter
- ::fill_cache — TopicFilter
- ::filter_by_tag — TopicFilter
- ::filter_by_topic — TopicFilter
- ::filter_by_topic_subtopic — TopicFilter
- ::filter_results — GtnLinter
- ::find_matching_texts — GtnLinter
- ::fixBashNotebook — GTNNotebooks
- ::fixPythonNotebook — GTNNotebooks
- ::fixRNotebook — GTNNotebooks
- ::fixSqlNotebook — GTNNotebooks
- ::fix_bib — GtnLinter
- ::fix_file — GtnLinter
- ::fix_ga_wf — GtnLinter
- ::fix_md — GtnLinter
- ::fix_notoc — GtnLinter
- ::format_admin_install — Gtn::Toolshed
- ::format_box_title — Gtn::Boxify
- ::format_reviewdog_output — GtnLinter
- ::generate_box — Gtn::Boxify
- ::generate_cache — Gtn::ModificationTimes
- ::generate_cache — Gtn::PublicationTimes
- ::generate_collapsible_title — Gtn::Boxify
- ::generate_css — GTNNotebooks
- ::generate_metrics — Gtn::Metrics
- ::generate_static_title — Gtn::Boxify
- ::generate_title — Gtn::Boxify
- ::get_all_funding — Gtn::Contributors
- ::get_authors — Gtn::Contributors
- ::get_contributors — Gtn::Contributors
- ::get_funders — Gtn::Contributors
- ::get_grants — Gtn::Contributors
- ::get_icon — Gtn::Boxify
- ::get_id — Gtn::Boxify
- ::get_image_dimensions — Gtn::Images
- ::get_instructors — Gtn::Contributors
- ::get_non_authors — Gtn::Contributors
- ::get_organisers — Gtn::Contributors
- ::get_posts — TopicFilter
- ::get_version — TopicFilter
- ::git_log — TopicFilter
- ::grant? — Gtn::Contributors
- ::graph_dot — TopicFilter
- ::group_doc_by_first_char — GTNNotebooks
- ::histogram — Gtn::Metrics
- ::histogram_dates — Gtn::Metrics
- ::html_image_dimensions — Gtn::Images
- ::identify_contributors — TopicFilter
- ::identify_funders_and_grants — TopicFilter
- ::incorrect_calls — GtnLinter
- ::init_cache — Gtn::ModificationTimes
- ::init_cache — Gtn::PublicationTimes
- ::iqr — Gtn::Metrics
- ::jekyll_config — GtnLinter
- ::link_gtn_slides_external — GtnLinter
- ::link_gtn_tutorial_external — GtnLinter
- ::lint_faq_file — SchemaValidator
- ::lint_material — SchemaValidator
- ::lint_news_file — SchemaValidator
- ::lint_quiz_file — SchemaValidator
- ::lint_topic — SchemaValidator
- ::lintable? — SchemaValidator
- ::list — Gtn::Contributors
- ::list_all_materials — TopicFilter
- ::list_all_tags — TopicFilter
- ::list_materials_by_tool — TopicFilter
- ::list_materials_structured — TopicFilter
- ::list_topics — TopicFilter
- ::list_topics_h — TopicFilter
- ::list_videos — TopicFilter
- ::load_bib — Gtn::Scholar
- ::mapped? — Gtn::Shortlinks
- ::markdownify — GTNNotebooks
- ::mermaid — TopicFilter
- ::mermaid_safe_label — TopicFilter
- ::message — ReviewDogEmitter
- ::name2md — Gtn::RoCrate
- ::new — Jekyll::Figurify
- ::new — Jekyll::IconTag
- ::new — Jekyll::IconTagVar
- ::new — Jekyll::CiteTag
- ::new — Jekyll::CiteUrlTag
- ::new — Jekyll::BibTag
- ::new — Jekyll::ToolTag
- ::new — Jekyll::WorkflowTag
- ::new — Jekyll::CustomLinkTag
- ::new — Jekyll::DumpSearchDataTag
- ::new_more_accessible_boxes — GtnLinter
- ::new_more_accessible_boxes_agenda — GtnLinter
- ::no_target_blank — GtnLinter
- ::non_existent_snippet — GtnLinter
- ::nonsemantic_list — GtnLinter
- ::notebook_filter — GTNNotebooks
- ::obtain_modification_count — Gtn::ModificationTimes
- ::obtain_time — Gtn::ModificationTimes
- ::obtain_time — Gtn::PublicationTimes
- ::person? — Gtn::Contributors
- ::populate_cache — Gtn::Scholar
- ::process_pages — TopicFilter
- ::renderMarkdownCells — GTNNotebooks
- ::render_citation — Gtn::Scholar
- ::render_jupyter_notebook — GTNNotebooks
- ::render_rmarkdown — GTNNotebooks
- ::replace_elements — Gtn::Boxify
- ::resolve_material — TopicFilter
- ::run — SchemaValidator
- ::run_linter_global — GtnLinter
- ::safe_title — Gtn::Boxify
- ::segment — Gtn::Metrics
- ::segment_page_by_key — Gtn::Metrics
- ::servers — Gtn::Usegalaxy
- ::set_plain_output — GtnLinter
- ::set_rdjson_output — GtnLinter
- ::set_short_path — GtnLinter
- ::short_tool — TopicFilter
- ::should_ignore — GtnLinter
- ::slide? — SchemaValidator
- ::snippets_too_close_together — GtnLinter
- ::time_cache — Gtn::ModificationTimes
- ::time_cache — Gtn::PublicationTimes
- ::title_classes — Gtn::Boxify
- ::topic_filter — TopicFilter
- ::tutorial? — SchemaValidator
- ::update — Gtn::Shortlinks
- ::useless_intro — GtnLinter
- ::validate_document — SchemaValidator
- ::validate_non_empty_key_value — SchemaValidator
- ::validate_requirements — SchemaValidator
- ::warning — ReviewDogEmitter
- ::write — Gtn::RoCrate
- ::youtube_bad — GtnLinter
- ::zenodo_api — GtnLinter
- #_build — Jekyll::SitemapGenerator2
- #all_date_sorted_materials — Object
- #automagic_loading — Object
- #boxify — Jekyll::Boxify
- #build_news — Object
- #bundle_preloads — Jekyll::JsBundle
- #bundle_preloads_prod — Jekyll::JsBundle
- #cache — Jekyll::ImplColourTag
- #call_engine — Object
- #check_indent — Object
- #collapse_date_pretty — Jekyll::GtnFunctions
- #collapse_event_date_pretty — Object
- #colour_tag — Jekyll::ImplColourTag
- #convert_to_material_list — Jekyll::GtnFunctions
- #convert_workflow_path_to_trs — Jekyll::GtnFunctions
- #correct — Object
- #data_library_for_tutorial — Object
- #degrees_to_radians — Hsluv
- #distance_from_pole — Hsluv
- #dot_product — Hsluv
- #duration_to_human — Jekyll::DurationFilter
- #elixirnode2name — Jekyll::GtnFunctions
- #f — Hsluv
- #f_inv — Hsluv
- #fedi2link — Jekyll::GtnFunctions
- #fetch2 — Hash
- #fetch_contributor — Jekyll::GtnFunctions
- #fetch_entity_avatar — Jekyll::GtnFunctions
- #fetch_entity_avatar_url — Jekyll::GtnFunctions
- #fetch_funding_url — Jekyll::GtnFunctions
- #fetch_toolcats — Object
- #fetch_tutorial_material — Jekyll::ImplTopicFilter
- #fetch_tutorial_material_by_id — Jekyll::ImplTopicFilter
- #fetch_workflowhub — Object
- #fetch_workflows — Object
- #filterSlides — Object
- #filterTutorials — Object
- #filter_authors — Jekyll::GtnFunctions
- #findDuration — Jekyll::ImplTopicFilter
- #find_duration — Object
- #find_learningpaths_including_topic — Jekyll::GtnFunctions
- #fixEvents — Object
- #fixNews — Object
- #fix_box_titles — Jekyll::GtnFunctions
- #format_contents — Object
- #format_events — Object
- #format_location — Jekyll::GtnFunctions
- #format_location_short — Jekyll::GtnFunctions
- #format_location_simple — Jekyll::GtnFunctions
- #format_news — Object
- #format_tutorials — Object
- #from_linear — Hsluv
- #generate — Jekyll::APIGenerator
- #generate — Jekyll::AuthorPageGenerator
- #generate — Jekyll::TagPageGenerator
- #generate — Jekyll::RecordingPageGenerator
- #generate — Jekyll::WorkflowPageGenerator
- #generate — Jekyll::SyntheticTopicGenerator
- #generate — Jekyll::EnvironmentVariablesGenerator
- #generate — Jekyll::Figurify
- #generate — Jekyll::RmarkdownGenerator
- #generate — Jekyll::PlaintextSlidesGenerator
- #generate — Jekyll::SitemapGenerator2
- #generateConfiguration — Jekyll::APIGenerator
- #generateLibrary — Jekyll::APIGenerator
- #generateVersion — Jekyll::APIGenerator
- #generate_dublin_core — Jekyll::JsonldFilter
- #generate_event_feeds — Object
- #generate_event_jsonld — Jekyll::JsonldFilter
- #generate_funder_jsonld — Jekyll::JsonldFilter
- #generate_grant_jsonld — Jekyll::JsonldFilter
- #generate_learning_pathway_jsonld — Jekyll::JsonldFilter
- #generate_material_jsonld — Jekyll::JsonldFilter
- #generate_matrix_feed — Object
- #generate_matrix_feed_itemized — Object
- #generate_news_jsonld — Jekyll::JsonldFilter
- #generate_opml — Object
- #generate_org_jsonld — Jekyll::JsonldFilter
- #generate_person_jsonld — Jekyll::JsonldFilter
- #generate_tag_topic_feeds — Object
- #generate_topic_feeds — Object
- #get_bounds — Hsluv
- #get_config — Jekyll::IconTag
- #get_config — Jekyll::Tags::SnippetIncludeTag
- #get_default_link — Jekyll::GtnFunctions
- #get_feedback_count — Jekyll::GtnFunctions
- #get_feedback_count_recent — Jekyll::GtnFunctions
- #get_feedbacks — Jekyll::GtnFunctions
- #get_icon — Jekyll::Tags::SnippetIncludeTag
- #get_og_desc — Jekyll::GtnFunctions
- #get_og_title — Jekyll::GtnFunctions
- #get_rating — Jekyll::GtnFunctions
- #get_rating_histogram — Jekyll::GtnFunctions
- #get_rating_histogram_chart — Jekyll::GtnFunctions
- #get_rating_recent — Jekyll::GtnFunctions
- #get_recent_feedbacks — Jekyll::GtnFunctions
- #get_recent_feedbacks_time — Jekyll::GtnFunctions
- #get_topic — Jekyll::GtnFunctions
- #get_upcoming_events — Jekyll::GtnFunctions
- #get_upcoming_events_for_this — Jekyll::GtnFunctions
- #get_version_number — Jekyll::GtnFunctions
- #get_workflow — Jekyll::ImplTopicFilter
- #getlist — Jekyll::DumpSearchDataTag
- #gh_cli_pr_info — Object
- #gh_cli_pr_list — Object
- #group_bucket_by — Object
- #group_icons — Jekyll::GtnFunctions
- #gtn_mod_date — Jekyll::GtnFunctions
- #gtn_pub_date — Jekyll::GtnFunctions
- #hex_to_hpluv — Hsluv
- #hex_to_hsluv — Hsluv
- #hex_to_rgb — Hsluv
- #how_many_topic_feedbacks — Jekyll::GtnFunctions
- #how_many_tutorial_feedbacks — Jekyll::GtnFunctions
- #hpluv_to_hex — Hsluv
- #hpluv_to_lch — Hsluv
- #hpluv_to_rgb — Hsluv
- #hsluv_to_hex — Hsluv
- #hsluv_to_lch — Hsluv
- #hsluv_to_rgb — Hsluv
- #humanize_types — Jekyll::GtnFunctions
- #identify_contributors — Jekyll::ImplTopicFilter
- #identify_funders — Jekyll::ImplTopicFilter
- #intersect_line_line — Hsluv
- #isDraft — Object
- #is_date_passed — Jekyll::GtnFunctions
- #json_boxify — Object
- #jupyter_post_write — Object
- #jupyter_pre_render — Object
- #last_modified_at — Jekyll::GtnFunctions
- #layout_to_human — Jekyll::GtnFunctions
- #lch_to_hpluv — Hsluv
- #lch_to_hsluv — Hsluv
- #lch_to_luv — Hsluv
- #lch_to_rgb — Hsluv
- #length_of_ray_until_intersect — Hsluv
- #linkify — Object
- #list_all_tags — Jekyll::ImplTopicFilter
- #list_draft_materials — Jekyll::ImplTopicFilter
- #list_materials_by_tool — Jekyll::ImplTopicFilter
- #list_materials_flat — Jekyll::ImplTopicFilter
- #list_materials_structured — Jekyll::ImplTopicFilter
- #list_topics_by_category — Jekyll::ImplTopicFilter
- #list_topics_h — Jekyll::ImplTopicFilter
- #list_topics_ids — Jekyll::ImplTopicFilter
- #list_usegalaxy_servers — Jekyll::GtnFunctions
- #list_usegalaxy_servers_shuffle — Jekyll::GtnFunctions
- #list_videos — Jekyll::ImplTopicFilter
- #list_videos_total_time — Jekyll::ImplTopicFilter
- #load_bundle — Jekyll::JsBundle
- #load_bundle_dev — Jekyll::JsBundle
- #load_bundle_production — Jekyll::JsBundle
- #load_svg — Jekyll::GtnFunctions
- #lookup_topic — Object
- #lookup_tuto — Object
- #luv_to_lch — Hsluv
- #luv_to_xyz — Hsluv
- #mapContributor — Object
- #markdownify — Object
- #markdownify — Jekyll::Tags::SnippetIncludeTag
- #materials_for_pathway — Jekyll::GtnFunctions
- #max_chroma_for — Hsluv
- #max_safe_chroma_for — Hsluv
- #most_recent_contributors — Jekyll::ImplTopicFilter
- #objectify — Object
- #onlyEnabled — Object
- #parseOptions — Object
- #parse_metadata — Object
- #parse_tutorial_for_zenodo_link — Object
- #parse_zenodo_id_formats — Object
- #printableMaterial — Object
- #pusher — Jekyll::AuthorPageGenerator
- #radians_to_degrees — Hsluv
- #recently_modified_tutorials — Jekyll::ImplTopicFilter
- #recently_published_tutorials — Jekyll::ImplTopicFilter
- #regex_replace — Jekyll::GtnFunctions
- #regex_replace_once — Jekyll::GtnFunctions
- #render — Jekyll::FileExistsTag
- #render — Jekyll::ColorPickerTag
- #render — Jekyll::IconTag
- #render — Jekyll::IconTagVar
- #render — Jekyll::CiteTag
- #render — Jekyll::CiteUrlTag
- #render — Jekyll::BibTag
- #render — Jekyll::ToolTag
- #render — Jekyll::WorkflowTag
- #render — Jekyll::CustomLinkTag
- #render — Jekyll::DumpSearchDataTag
- #render — Jekyll::Tags::SnippetIncludeTag
- #render_for_text — Jekyll::IconTag
- #replace_newline_doublespace — Jekyll::GtnFunctions
- #request — Object
- #rgb_prepare — Hsluv
- #rgb_to_hex — Hsluv
- #rgb_to_hpluv — Hsluv
- #rgb_to_hsluv — Hsluv
- #rgb_to_lch — Hsluv
- #rgb_to_xyz — Hsluv
- #safe_load_yaml — Object
- #safe_site_config — Object
- #send_news — Object
- #serialise — Object
- #short_id — Object
- #show_errors — Object
- #shuffle — Jekyll::GtnFunctions
- #slugify_unsafe — Jekyll::GtnFunctions
- #split_sentence — Object
- #synthesize — Object
- #test_doi — GtnLinterTest
- #test_exact — IntersectionTest
- #test_external_gtn_link — GtnLinterTest
- #test_external_gtn_link_slides — GtnLinterTest
- #test_fix_broken_link — GtnLinterTest
- #test_fix_notoc — GtnLinterTest
- #test_single_page — BoxIdTest
- #test_workflow — Object
- #test_youtube — GtnLinterTest
- #testnew_title_ — GtnLinterTest
- #timefmt — Object
- #titleize — Object
- #to_euro_lunch — DateTime
- #to_jsonld — Jekyll::JsonldFilter
- #to_keys — Jekyll::ImplTopicFilter
- #to_linear — Hsluv
- #to_material — Jekyll::ImplTopicFilter
- #to_pfo_jsonld — Jekyll::JsonldFilter
- #to_prometheus — Hash
- #to_stars — Jekyll::GtnFunctions
- #to_vals — Jekyll::ImplTopicFilter
- #top_citations — Jekyll::GtnFunctions
- #topic_count — Jekyll::ImplTopicFilter
- #topic_filter — Jekyll::ImplTopicFilter
- #topic_filter_tutorial_count — Jekyll::ImplTopicFilter
- #topic_name_from_page — Jekyll::GtnFunctions
- #track — Object
- #translate — Object
- #tutorials_over_time_bar_chart — Jekyll::GtnFunctions
- #unix_time_to_date — Jekyll::GtnFunctions
- #unsafe_slugify — Object
- #update_data_library — Object
- #update_tutorial — Object
- #url_exists — Jekyll::GtnFunctions
- #url_prefix — Object
- #validate_document — Object
- #visitAndMarkdownify — Object
- #write_data_library — Object
- #xyz_to_luv — Hsluv
- #xyz_to_rgb — Hsluv