module Gtn::Toolshed

Handle toolshed yaml formatting for ephemeris

Public Class Methods

format_admin_install (data, tool_list, topic, tool_cats)

Prepare a tool list for installation

Params:

data

The data from metadata/toolshed-revisions.json

tool_list

The list of tools to check (either ‘upload1’ or ‘toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy10’ style tools)

topic

The topic to install the tools under

Returns:

supported

A string of the admin install, ready for ephemeris

# File _plugins/gtn/toolshed.rb, line 16
def self.format_admin_install(data, tool_list, topic, tool_cats)
  # p "Calculating supported servers for this tool list"
  return {} if data.nil? || data.empty?

  tools = tool_list.select { |t| data.key? t }.map do |tool|
    tool_info = data[tool]
    {
      'name' => tool_info[1],
      'owner' => tool_info[0],
      'revisions' => tool_info[2],
      'tool_panel_section_label' => tool_cats["#{tool_info[0]}/#{tool_info[1]}"] || topic,
      'tool_shed_url' => 'https://toolshed.g2.bx.psu.edu/',
    }
  end

  {
    'install_tool_dependencies' => true,
    'install_repository_dependencies' => true,
    'install_resolver_dependencies' => true,
    'tools' => tools
  }
end