Tutorials using devteam/fastqc

Servers Offering this Tool

UseGalaxy.eu (0.74+galaxy0)

This is a guess, we are not currently checking if that is actually present.

Observed Tool Versions

• 0.74+galaxy0
• 0.73+galaxy0
• 0.72+galaxy1
• 0.72
• 0.71
• 0.69
• 0.68
• 0.65

• Assembly / Hands-on: Hands-on: An Introduction to Genome Assembly
• Assembly / Hands-on: Hands-on: Large genome assembly and polishing
• Assembly / Hands-on: Hands-on: Assembly of metagenomic sequencing data
• Assembly / Hands-on: Hands-on: Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• Assembly / Hands-on: Hands-on: Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• Assembly / Hands-on: Hands-on: Unicycler Assembly
• Ecology / Hands-on: Hands-on: Metabarcoding/eDNA through Obitools
• Ecology / Hands-on: Hands-on: RAD-Seq de-novo data analysis
• Ecology / Hands-on: Hands-on: RAD-Seq Reference-based data analysis
• Epigenetics / Hands-on: Hands-on: ATAC-Seq data analysis
• Epigenetics / Hands-on: Hands-on: CUT&RUN data analysis
• Epigenetics / Hands-on: Hands-on: Identification of the binding sites of the Estrogen receptor
• Epigenetics / Hands-on: Hands-on: Formation of the Super-Structures on the Inactive X
• Epigenetics / Hands-on: Hands-on: DNA Methylation data analysis
• Epigenetics / Hands-on: Hands-on: Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• Genome Annotation / Hands-on: Hands-on: CRISPR screen analysis
• Introduction to Galaxy Analyses / Hands-on: Hands-on: Hands-on: Hands-on: A short introduction to Galaxy
• Microbiome / Hands-on: Hands-on: Identification of the micro-organisms in a beer using Nanopore sequencing
• Microbiome / Hands-on: Hands-on: Assembly of metagenomic sequencing data
• Microbiome / Hands-on: Hands-on: Metatranscriptomics analysis using microbiome RNA-seq data
• Microbiome / Hands-on: Hands-on: Metatranscriptomics analysis using microbiome RNA-seq data (short)
• Microbiome / Hands-on: Hands-on: 16S Microbial analysis with Nanopore data
• Microbiome / Hands-on: Hands-on: Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• Sequence analysis / Hands-on: Hands-on: Mapping
• Sequence analysis / Hands-on: Hands-on: Quality Control
• Sequence analysis / Hands-on: Hands-on: SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• Single Cell / Hands-on: Hands-on: Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Single Cell / Hands-on: Hands-on: Understanding Barcodes
• Transcriptomics / Hands-on: Hands-on: CLIP-Seq data analysis from pre-processing to motif detection
• Transcriptomics / Hands-on: Hands-on: De novo transcriptome reconstruction with RNA-Seq
• Transcriptomics / Hands-on: Hands-on: Genome-wide alternative splicing analysis
• Transcriptomics / Hands-on: Hands-on: De novo transcriptome assembly, annotation, and differential expression analysis
• Transcriptomics / Hands-on: Hands-on: Pathway analysis with the MINERVA Platform
• Transcriptomics / Hands-on: Hands-on: Whole transcriptome analysis of Arabidopsis thaliana
• Transcriptomics / Hands-on: Hands-on: Reference-based RNA-Seq data analysis
• Transcriptomics / Hands-on: Hands-on: RNA-RNA interactome data analysis
• Transcriptomics / Hands-on: Hands-on: 1: RNA-Seq reads to counts
• Transcriptomics / Hands-on: Hands-on: Differential abundance testing of small RNAs
• Variant Analysis / Hands-on: Hands-on: Exome sequencing data analysis for diagnosing a genetic disease
• Variant Analysis / Hands-on: Hands-on: Calling variants in non-diploid systems
• Variant Analysis / Hands-on: Hands-on: Somatic Variant Discovery from WES Data Using Control-FREEC
• Variant Analysis / Hands-on: Hands-on: Identification of somatic and germline variants from tumor and normal sample pairs
• Variant Analysis / Hands-on: Hands-on: M. tuberculosis Variant Analysis