GMOD

Tutorials from the world of the Generic Model Organism Database (GMOD)

GMOD is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data, many of which are directly interoperable.

Material

JBrowse 1

Learn to use JBrowse v1 here.

MAKER

Genome Annotation with MAKER.

InterMine

InterMine is a data warehouse you can query for interesting features and data.

Apollo v2

Apollo is a collaborative, real time genome annotation editor.

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

Ava Hoffman

Mateo Boudet

Avans Hogeschool

Daniela Butano

Bazante Sanders

Robert Meller

Laura Leroi

Torsten Seemann

Erwan Corre

Helena Rasche

Yo Yehudi

Bérénice Batut

Anton Nekrutenko

Alexandre Cormier

Stéphanie Robin

Anna Syme

Frederick Tan

Natalie Kucher

Miaomiao Zhou

Elizabeth Humphries

Simon Gladman

Candace Savonen

Saskia Hiltemann

Katherine Cox

Anthony Bretaudeau

Delphine Lariviere

Nathan Dunn

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

NHGRI ANVIL

NHGRI GDS Community Network