Assembly — Community Home
This is a new, experimental "Community Home" for a given topic. It is intended to highlight community contributions over the years to a topic!2024 Year in Review
So many new additions to our community!
1
Events
2
Tutorials
6
Recordings
3
Workflows
1
Organisations
2
Contributors
Events
Tutorials
Recordings
- Recording of ERGA post-assembly QC
- Recording of Decontamination of a genome assembly
- Recording of Assembly of the mitochondrial genome from PacBio HiFi reads
- Recording of Chloroplast genome assembly
- Recording of Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
- Recording of Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
Workflows
- Assembly-decontamination-VGP9
- Mitogenome-Assembly-VGP0
- Genome Assembly of MRSA using Oxford Nanopore MinION (and Illumina data if available)
Organisations
Contributors
2023 Year in Review
So many new additions to our community!
1
Learning Pathways
2
Tutorials
2
Recordings
1
Faqs
10
Workflows
1
Contributors
Learning Pathways
Tutorials
Recordings
- Recording of Large genome assembly and polishing
- Recording of Assembly of metagenomic sequencing data
Faqs
Workflows
- Post-assembly workflow
- kmer counting - meryl - upgraded
- Trim and filter reads - fastp - upgraded
- Racon polish with long reads, x4 - upgraded
- Racon polish with Illumina reads (R1 only), x2 - upgraded
- Data QC - upgraded
- Combined workflows for large genome assembly - upgraded
- Assess genome quality - upgraded
- Assembly with Flye - upgraded
- Assembly polishing - upgraded
Contributors
2022 Year in Review
So many new additions to our community!
1
News
3
Tutorials
1
Slides
1
Recordings
6
Faqs
1
Workflows
7
Contributors
News
Tutorials
- Assembly of metagenomic sequencing data
- Genome Assembly Quality Control
- Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
Slides
Recordings
Faqs
- Downloading the files from the NCBI server fails or takes too long.
- Can we polish the assembly with long reads too?
- Running more than one round of Pilon polishing
- Most tools seem to have options for assembly using long and short reads, what are the pros and cons of the different tools?
- Why does my assembly graph in Bandage look different to the one pictured in the tutorial?
- Is it possible to use alternative tools to those proposed in the tutorial?
Workflows
Contributors
2021 Year in Review
So many new additions to our community!
2
News
4
Tutorials
3
Slides
4
Recordings
1
Faqs
4
Workflows
3
Contributors
News
- New Tutorials: PacBio data QC and Genome Assembly, and Genome Annotation with Funannotate
- New Tutorials: Genome assembly of a MRSA genome
Tutorials
- Genome assembly using PacBio data
- Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
- Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
- Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
Slides
- An introduction to get started in genome assembly and annotation
- Deeper look into Genome Assembly algorithms
- Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Recordings
- Recording of Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
- Recording of Chloroplast genome assembly
- Recording of Antibiotic resistance detection
- Recording of An Introduction to Genome Assembly
Faqs
Workflows
- Genome Assembly using PacBio data
- VGP assembly: training workflow
- Genome Assembly of MRSA using Illumina MiSeq Data
- Chloroplast-genome-assembly-and-annotation
Contributors
2020 Year in Review
So many new additions to our community!
2
Tutorials
2
Workflows
1
Grants
1
Organisations
3
Contributors
Tutorials
- Chloroplast genome assembly
- Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
Workflows
Grants
Organisations
Contributors
2019 Year in Review
So many new additions to our community!
1
Tutorials
2
Workflows
2
Contributors
Tutorials
Workflows
Contributors
2018 Year in Review
So many new additions to our community!
1
Tutorials
1
Workflows
2017 Year in Review
So many new additions to our community!
3
Tutorials
3
Slides
1
Workflows
11
Contributors
Tutorials
Slides
Workflows
Contributors
Cumulative Data as CSV
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