nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Helena Rasche
Björn Grüning
Deepti Varshney
Nuwan Goonasekera
Cristóbal Gallardo
Teresa Müller
Matúš Kalaš
Miaomiao Zhou
Polina Polunina
Grace Hall
Saskia Hiltemann
Anna Syme
Siyu Chen
Willem de Koning
Delphine Lariviere
Bérénice Batut
Bazante Sanders
Anthony Bretaudeau
Tristan Reynolds
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Avans
Australian BioCommons
Melbourne Bioinformatics
ABRomics
The University of Melbourne