nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Bérénice Batut
Bazante Sanders
Saskia Hiltemann
Matúš Kalaš
Siyu Chen
Miaomiao Zhou
Cristóbal Gallardo
Deepti Varshney
Anthony Bretaudeau
Nuwan Goonasekera
Grace Hall
Delphine Lariviere
Willem de Koning
Helena Rasche
Tristan Reynolds
Anna Syme
Teresa Müller
Björn Grüning
Polina Polunina
Funding
These individuals or organisations provided funding support for the development of this resource
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Avans
ABRomics
Australian BioCommons
Melbourne Bioinformatics
The University of Melbourne