nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Willem de Koning
Tristan Reynolds
Nuwan Goonasekera
Cristóbal Gallardo
Teresa Müller
Matúš Kalaš
Saskia Hiltemann
Björn Grüning
Bérénice Batut
Anna Syme
Grace Hall
Deepti Varshney
Siyu Chen
Polina Polunina
Bazante Sanders
Helena Rasche
Anthony Bretaudeau
Delphine Lariviere
Miaomiao Zhou
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
Australian BioCommons
The University of Melbourne
Melbourne Bioinformatics
ABRomics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.