nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Tristan Reynolds
Deepti Varshney
Bazante Sanders
Grace Hall
Miaomiao Zhou
Anna Syme
Nuwan Goonasekera
Siyu Chen
Delphine Lariviere
Polina Polunina
Teresa Müller
Willem de Koning
Cristóbal Gallardo
Matúš Kalaš
Bérénice Batut
Saskia Hiltemann
Anthony Bretaudeau
Helena Rasche
Björn Grüning
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
Avans
Australian BioCommons
The University of Melbourne
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.