nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Siyu Chen
Willem de Koning
Delphine Lariviere
Bazante Sanders
Saskia Hiltemann
Bérénice Batut
Grace Hall
Teresa Müller
Björn Grüning
Matúš Kalaš
Helena Rasche
Deepti Varshney
Miaomiao Zhou
Cristóbal Gallardo
Nuwan Goonasekera
Anna Syme
Polina Polunina
Anthony Bretaudeau
Tristan Reynolds
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
Australian BioCommons
Melbourne Bioinformatics
ABRomics
The University of Melbourne