nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Delphine Lariviere
Bazante Sanders
Teresa Müller
Polina Polunina
Matúš Kalaš
Grace Hall
Nuwan Goonasekera
Deepti Varshney
Willem de Koning
Tristan Reynolds
Saskia Hiltemann
Helena Rasche
Anna Syme
Miaomiao Zhou
Cristóbal Gallardo
Björn Grüning
Bérénice Batut
Anthony Bretaudeau
Siyu Chen
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
The University of Melbourne
Melbourne Bioinformatics
Avans
Australian BioCommons
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.