nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Teresa Müller
Deepti Varshney
Grace Hall
Siyu Chen
Cristóbal Gallardo
Saskia Hiltemann
Miaomiao Zhou
Anna Syme
Björn Grüning
Nuwan Goonasekera
Willem de Koning
Delphine Lariviere
Anthony Bretaudeau
Tristan Reynolds
Bérénice Batut
Polina Polunina
Helena Rasche
Bazante Sanders
Matúš Kalaš
Funding
These individuals or organisations provided funding support for the development of this resource
ABRomics
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
The University of Melbourne
Avans
Australian BioCommons