nanopore
Tutorials covering nanopore
Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| Chloroplast genome assembly | |||||
| Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) | |||||
| Hybrid genome assembly - Nanopore and Illumina | |||||
| Large genome assembly and polishing |
Microbiome
| Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
|---|---|---|---|---|---|
| 16S Microbial analysis with Nanopore data | |||||
| Antibiotic resistance detection | |||||
| Identification of the micro-organisms in a beer using Nanopore sequencing |
Contributors
This material was contributed to by:
Siyu Chen
Miaomiao Zhou
Deepti Varshney
Teresa Müller
Bazante Sanders
Matúš Kalaš
Willem de Koning
Björn Grüning
Helena Rasche
Tristan Reynolds
Polina Polunina
Anthony Bretaudeau
Cristóbal Gallardo
Saskia Hiltemann
Grace Hall
Anna Syme
Nuwan Goonasekera
Delphine Lariviere
Bérénice Batut
Funding
These individuals or organisations provided funding support for the development of this resource
Avans
The University of Melbourne
Australian BioCommons
Melbourne Bioinformatics
Gallantries
This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.
ABRomics