Delphine Lariviere
Contributions
The following list includes only slides and tutorials where the individual or organisation has been added to the contributor list. This may not include the sum total of their contributions to the training materials (e.g. GTN css or design, tutorial datasets, workflow development, etc.) unless described by a news post.
Editorial Roles
This contributor has taken on additional responsibilities as an editor for the following topics. They are responsible for ensuring that the content is up to date, accurate, and follows GTN best practices.
- Topic: Assembly
- Topic: Using Galaxy and Managing your Data
- Topic: Introduction to Galaxy Analyses
Tutorials
- Proteomics / Proteogenomics 2: Database Search ✍️
- Using Galaxy and Managing your Data / JupyterLab in Galaxy 🧐
- Using Galaxy and Managing your Data / Understanding Galaxy history system 🧐
- Using Galaxy and Managing your Data / Use Jupyter notebooks in Galaxy ✍️ 🧐
- Assembly / ERGA post-assembly QC ✍️ 🧐
- Assembly / Decontamination of a genome assembly ✍️ 🧐
- Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step ✍️ 🧐
- Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads ✍️
- Assembly / Unicycler Assembly ✍️ 🧐
- Assembly / Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data ✍️ 🧐
- Assembly / Making sense of a newly assembled genome ✍️
- Galaxy Community Building / Creating a Special Interest Group 🧐
- Galaxy Community Building / What's a Special Interest Group? 🧐
- Genome Annotation / Essential genes detection with Transposon insertion sequencing ✍️ 🧐
Slides
- Assembly / Unicycler Assembly ✍️ 🧐
- Assembly / Deeper look into Genome Assembly algorithms ✍️
- Genome Annotation / Essential genes detection with Transposon insertion sequencing ✍️ 🧐
FAQs
- Adding a tag to a collection
- Renaming a collection
- Add genome and annotations to IGV from Galaxy
- Add Mapped reads track to IGV from Galaxy
Video Recordings
- Using Galaxy and Managing your Data / Using dataset collections 💬 🗣
- Assembly / ERGA post-assembly QC 💬 🗣
- Assembly / Decontamination of a genome assembly 💬 🗣
- Assembly / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step 💬 🗣
- Assembly / Assembly of the mitochondrial genome from PacBio HiFi reads 💬 🗣
Events
GitHub Activity
github Issues Reported
News
Next GTN CoFest May 20, 2021
18 March 2021
Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome!
New Tutorial: VGP assembly pipeline
14 March 2022
We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.

Next GTN CoFest May 20, 2021
18 March 2021
Every 3 months we organise one day dedicated to the GTN community! Thursday, May 20th is the next GTN CoFest. We will be working on the training materials, have discussions with the global Galaxy traning community. Do you teach with Galaxy? Want to learn how to add your tutorial to the GTN? New to the community and just want to learn more? Everybody is welcome!

New Tutorial: VGP assembly pipeline
14 March 2022
We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network. The Vertebrate Genomes Project aims to generate high-quality, near-error-free, gap-free, chromosome-level, haplotype-phased, annotated reference genome assemblies for every vertebrate species.
External Links
Favourite Topics
Favourite Formats