MIGHTS

Tutorials covering MIGHTS

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
paper-replication MIGHTS
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Combining single cell datasets after pre-processing
paper-replication MIGHTS
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Filter, plot and explore single-cell RNA-seq data with Scanpy
paper-replication MIGHTS
Filter, plot, and explore single cell RNA-seq data with Seurat
paper-replication MIGHTS
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Inferring single cell trajectories with Scanpy
paper-replication MIGHTS
Inferring single cell trajectories with Monocle3
paper-replication MIGHTS

Contributors

This material was contributed to by:

Jonathan Manning avatar Jonathan Manningorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoHelena Rasche avatar Helena Rascheorcid logoTeresa Müller avatar Teresa MüllerPablo Moreno avatar Pablo Morenoorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoBérénice Batut avatar Bérénice BatutMehmet Tekman avatar Mehmet Tekmanorcid logoMatthias Bernt avatar Matthias BerntCamila Goclowski avatar Camila Goclowskiorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoMarisa Loach avatar Marisa Loachorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMorgan Howells avatar Morgan HowellsDavid López avatar David Lópezorcid logoJulia Jakiela avatar Julia Jakielaorcid logoBjörn Grüning avatar Björn Grüningorcid logoWendi Bacon avatar Wendi Baconorcid logoMartin Čech avatar Martin Čech

Funding

These individuals or organisations provided funding support for the development of this resource

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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087
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EPSRC/OU
The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University