MIGHTS

Tutorials covering MIGHTS

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Generating a single cell matrix using Alevin
paper-replication MIGHTS
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook
Combining single cell datasets after pre-processing
paper-replication MIGHTS
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Filter, plot and explore single-cell RNA-seq data with Scanpy
paper-replication MIGHTS
Filter, plot, and explore single cell RNA-seq data with Seurat
paper-replication MIGHTS
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook
Inferring single cell trajectories with Scanpy
paper-replication MIGHTS
Inferring single cell trajectories with Monocle3
paper-replication MIGHTS

Contributors

This material was contributed to by:

orcid logoMarisa Loach avatar Marisa Loachorcid logoMartin Čech avatar Martin Čechorcid logoBérénice Batut avatar Bérénice Batutorcid logoMatthias Bernt avatar Matthias Berntorcid logoAmirhossein Naghsh Nilchi avatar Amirhossein Naghsh Nilchiorcid logoBeatriz Serrano-Solano avatar Beatriz Serrano-Solanoorcid logoWendi Bacon avatar Wendi Baconorcid logoSaskia Hiltemann avatar Saskia HiltemannJonathan Manning avatar Jonathan ManningDavid López avatar David Lópezorcid logoPavankumar Videm avatar Pavankumar Videmorcid logoTeresa Müller avatar Teresa MüllerCamila Goclowski avatar Camila Goclowskiorcid logoBjörn Grüning avatar Björn GrüningMehmet Tekman avatar Mehmet Tekmanorcid logoHelena Rasche avatar Helena Rascheorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMorgan Howells avatar Morgan HowellsPablo Moreno avatar Pablo Moreno

Funding

These individuals or organisations provided funding support for the development of this resource

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EPSRC/OU
The research internship was supported through EPSRC Training Grant DTP 2020-2021 Open University
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EOSC-Life
EOSC-Life has received funding from the European Union’s Horizon 2020 programme under grant agreement number 824087