|
Introduction to Microbiome Analysis
|
|
|
|
|
|
|
16S Microbial analysis with Nanopore data
|
|
|
|
|
|
|
Analyses of metagenomics data - The global picture
|
|
|
|
|
|
|
Antibiotic resistance detection
|
|
|
|
|
|
|
Assembly of metagenomic sequencing data
|
|
|
|
|
|
|
Binning of metagenomic sequencing data
|
|
|
|
|
|
|
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
|
|
|
|
|
|
|
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
|
|
|
|
|
|
|
Calculating α and β diversity from microbiome taxonomic data
|
|
|
|
|
|
|
Clinical Metaproteomics 1: Database-Generation
|
|
|
|
|
|
|
Clinical Metaproteomics 2: Discovery
|
|
|
|
|
|
|
Clinical Metaproteomics 3: Verification
|
|
|
|
|
|
|
Clinical Metaproteomics 4: Quantitation
|
|
|
|
|
|
|
Clinical Metaproteomics 5: Data Interpretation
|
|
|
|
|
|
|
Identification of the micro-organisms in a beer using Nanopore sequencing
|
|
|
|
|
|
|
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2
|
|
|
|
|
|
|
Indexing and profiling microbes with MetaSBT
|
|
|
|
|
|
|
MGnify v5.0 Amplicon Pipeline
|
|
|
|
|
|
|
MGnify v5.0 Amplicon Pipeline
|
|
|
|
|
|
|
Metatranscriptomics analysis using microbiome RNA-seq data
|
|
|
|
|
|
|
Metatranscriptomics analysis using microbiome RNA-seq data (short)
|
|
|
|
|
|
|
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
|
|
|
|
|
|
|
help QIIME 2 Cancer Microbiome Intervention
|
|
|
|
|
|
|
help QIIME 2 Moving Pictures
|
|
|
|
|
|
|
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
|
|
|
|
|
|
|
Remove contamination and host reads
|
|
|
|
|
|
|
Taxonomic Profiling and Visualization of Metagenomic Data
|
|
|
|
|
|
|
16S Microbial Analysis with mothur (extended)
|
|
|
|
|
|
|
16S Microbial Analysis with mothur (short)
|
|
|
|
|
|