Ecology

Lesson Slides Hands-on Recordings Input dataset Workflows
Audio data annotation with NEAL (Nature + Energy Audio labeler)
ecology biodiversity sound media annotation
Audio data annotation with NEAL (Nature + Energy Audio labeler)
ecology biodiversity sound media annotation
Biodiversity data exploration
taxonomic data data quality biodiversity
Champs blocs indicators
Ecosystem EBV class EBV dataset EBV workflow Marine ecosystems biodiversity
Checking expected species and contamination in bacterial isolate
illumina bacteria microgalaxy
Cleaning GBIF data for the use in Ecology
gbif data management data cleaning biodiversity
Cleaning GBIF data using OpenRefine
biodiversity
Compute and analyze biodiversity metrics with PAMPA toolsuite
Species population EBV class Community composition EBV class EBV dataset EBV workflow modeling biodiversity
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
Metadata EML FAIR Data Paper biodiversity
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
Metadata EML Ecology Biodiversity FAIR Data Paper
Data submission using ENA upload Tool
Ecoregionalization workflow tutorial
ecology taxonomic data EBV workflow modeling gbif ocean earth-system interactive-tools biodiversity
Ecoregionalization workflow tutorial
ecology taxonomic data EBV workflow modeling gbif ocean earth-system interactive-tools biodiversity
From NDVI data with OpenEO to time series visualisation with Holoviews
earth-system land degradation NDVI copernicus holoviews
Life Traits Ecoregionalization workflow
biodiversity
Marine Omics identifying biosynthetic gene clusters
earth-system ocean marine omics biodiversity
Metabarcoding/eDNA through Obitools
Genetic composition EBV class Community composition EBV class EBV dataset EBV workflow eDNA Metabarcoding biodiversity
Obis marine indicators
earth-system ocean marine omics biodiversity
Phylodiversity analysis quick tutorial
ecology taxonomic data
Phylodiversity analysis quick tutorial
ecology taxonomic data
Preparing genomic data for phylogeny reconstruction
phylogeny data handling functional annotation biodiversity
QGIS Web Feature Services
earth-system GIS Geographical Information System WFS Spatial data Maps OGC biodiversity
RAD-Seq Reference-based data analysis
RAD-seq Genetic composition EBV class Species population EBV class EBV dataset EBV workflow biodiversity
RAD-Seq de-novo data analysis
RAD-seq Genetic composition EBV class Species populations EBV class EBV dataset EBV workflow biodiversity
RAD-Seq to construct genetic maps
RAD-seq Genetic composition EBV class EBV dataset EBV workflowz biodiversity
Regional GAM
Species populations EBV class Species traits EBV class EBV dataset EBV workflow biodiversity
Sentinel 2 biodiversity
Remote sensing biodiversity
Species distribution modeling
interactive-tools modeling gbif species populations EBV class biodiversity
Taxonomic Analysis of eDNA
biodiversity
Visualization of Climate Data using NetCDF xarray Map Plotting
pangeo
Visualize EBV cube data with Panoply netCDF viewer
interactive-tools EBV cube Data visualization

Microbiome

Lesson Slides Hands-on Recordings Input dataset Workflows
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2
fungi ecology