Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS analysis with the metaMS package
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Simeon Schum avatar Simeon SchumMaren Stillger avatar Maren Stillgerorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoYann Guitton avatar Yann GuittonWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoBérénice Batut avatar Bérénice Batutorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKristina Gomoryova avatar Kristina GomoryovaGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoJulia Jakiela avatar Julia Jakielaorcid logoMelanie Föll avatar Melanie FöllCécile Canlet avatar Cécile CanletSimon Bray avatar Simon BrayMélanie Petera avatar Mélanie Peteraorcid logoBjörn Grüning avatar Björn Grüningorcid logoMatej Troják avatar Matej TrojákJulien Saint-Vanne avatar Julien Saint-VanneJean-François Martin avatar Jean-François Martinorcid logoHelge Hecht avatar Helge Hechtorcid logoHelena Rasche avatar Helena Rasche

Funding

These individuals or organisations provided funding support for the development of this resource

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RFMF
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UFR
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MetaboHUB
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ELIXIR Europe