Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

Mélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie FöllYann Guitton avatar Yann Guittonorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelge Hecht avatar Helge HechtCécile Canlet avatar Cécile Canletorcid logoMaxim Skoryk avatar Maxim SkorykSimon Bray avatar Simon Brayorcid logoJulia Jakiela avatar Julia JakielaGildas Le Corguillé avatar Gildas Le CorguilléJean-François Martin avatar Jean-François Martinorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoMatej Troják avatar Matej TrojákWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamJulien Saint-Vanne avatar Julien Saint-VanneMaren Stillger avatar Maren Stillger

Funding

These individuals or organisations provided funding support for the development of this resource

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UFR
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ELIXIR Europe